Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.7e-136 488.0 277 100.0
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.0e-127 460.3 277 92.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.8e-127 459.5 277 92.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.8e-127 459.5 277 92.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 92.4
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 91.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 92.8
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 90.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 92.4
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 9.8e-126 453.8 277 91.3
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 9.8e-126 453.8 277 91.3
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 9.8e-126 453.8 276 92.0
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 92.1
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 90.3
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.9
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 91.3
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 90.6
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.3
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 90.6
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 90.3
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 90.3
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 90.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 90.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 89.2
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.9
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 88.8
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.2
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 89.2
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 90.3
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 88.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 88.1
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 89.2
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 89.9
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.8
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 89.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 88.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 90.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 87.7
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 86.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 87.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.3
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 88.1
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.2e-120 434.5 276 87.0
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 86.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 88.8
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.4e-119 433.3 274 86.1
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 85.2
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 87.4
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.1e-119 432.2 261 91.6
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 5.2e-119 431.4 274 85.8
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 86.6
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.0e-118 429.5 278 85.6
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.0e-118 429.5 321 77.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 84.5
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 85.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 5.8e-118 427.9 277 85.9
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 5.8e-118 427.9 301 81.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 9.8e-118 427.2 283 85.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 6.4e-117 424.5 277 83.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 84.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 85.1
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 9.2e-116 420.6 275 84.7
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 9.2e-116 420.6 275 84.7
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.2e-115 420.2 277 87.4
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.3e-114 416.8 277 84.8
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.9e-114 415.2 280 84.6
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 5.0e-114 414.8 277 84.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.6e-114 414.1 320 75.9
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.9e-113 412.9 261 87.4
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.6e-113 411.4 261 86.6
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 7.3e-113 411.0 277 84.8
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.2e-112 410.2 318 74.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-111 407.1 318 70.8
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 6.8e-111 404.4 278 82.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.2e-110 403.7 274 83.6
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 3.4e-110 402.1 255 90.2
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 4.4e-110 401.7 270 84.4
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.8e-110 401.4 299 73.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 9.8e-110 400.6 277 81.2
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.8e-110 400.6 275 81.1
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 4.9e-109 398.3 278 79.9
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.4e-108 396.0 264 84.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.4e-108 394.8 283 79.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.1e-107 392.9 274 75.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.6e-107 391.7 278 80.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.6e-107 391.7 277 81.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-106 390.2 273 79.9
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.5e-105 386.7 269 77.0
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.5e-105 386.7 256 85.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 7.3e-105 384.4 260 83.5
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.1e-104 382.9 256 82.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.0e-102 376.3 262 80.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.4e-102 375.6 355 60.6
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.3e-101 373.6 275 78.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.7e-101 373.2 282 76.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 8.4e-101 370.9 331 69.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.9e-100 369.8 222 93.7
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 5.4e-100 368.2 230 90.4
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 6.0e-99 364.8 230 88.3
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.8e-96 355.9 222 90.5
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.0e-90 337.4 277 65.7
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.1e-89 334.0 268 70.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.1e-88 329.7 250 76.8
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.1e-88 329.7 250 76.8
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.1e-88 327.8 314 66.6
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 8.1e-88 327.8 277 66.4
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.5e-86 323.6 281 68.3
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.4e-86 322.0 224 83.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 4.9e-85 318.5 274 65.3
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-84 316.2 274 68.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 9.3e-84 314.3 283 65.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-83 312.8 274 68.2
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 9.0e-71 271.2 258 60.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 7.6e-70 268.1 187 81.3
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.1e-67 260.0 287 53.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 5.7e-65 251.9 278 55.4
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.4e-60 237.3 156 76.3
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 4.6e-59 232.3 145 89.7
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 6.1e-59 231.9 129 92.2
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 5.1e-58 228.8 181 76.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.5e-54 217.2 138 84.1
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.3e-50 203.4 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.3e-48 195.3 300 46.3
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-40 171.0 97 91.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 4.8e-40 169.1 106 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.0e-38 163.7 90 93.3
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.3e-33 146.4 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.8e-31 140.6 155 58.7
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.1e-31 139.8 80 85.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.1e-27 127.1 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.1e-27 127.1 74 89.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 8.0e-27 125.2 80 80.0
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 3.5e-22 109.8 258 36.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 4.7e-19 99.4 158 45.6
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-18 98.2 71 88.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-17 94.7 147 40.8
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.0e-17 94.0 149 45.6
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-17 93.2 71 81.7
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-17 93.2 123 50.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 9.8e-17 91.7 157 42.7
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-16 91.3 74 71.6
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.7e-16 90.9 156 39.1
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 4.1e-15 86.3 160 38.8
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 2.7e-14 83.6 57 73.7
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.5e-14 83.2 155 35.5
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.7e-13 80.9 46 82.6
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.3e-12 75.5 70 64.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-11 73.6 46 80.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.8e-10 68.9 157 37.6
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.9e-10 68.6 163 35.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.5e-09 67.8 43 79.1
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.0e-09 67.4 240 31.2
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.7e-08 63.2 140 41.4


User provided reference genes

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