Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.4e-48 195.3 108 100.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.7e-31 138.7 113 79.6
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.8e-27 125.9 110 68.2
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-26 122.9 108 70.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.0e-26 122.5 108 69.4
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 4.5e-26 121.3 112 67.9
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.3e-25 119.8 112 63.4
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.5e-24 115.5 112 67.9
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.2e-23 113.2 113 70.8
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 4.7e-23 111.3 115 69.6
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 4.7e-23 111.3 113 62.8
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-22 110.2 113 60.2
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 2.3e-22 109.0 113 61.9
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.0e-22 108.6 112 61.6
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.9e-22 108.2 113 63.7
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 5.1e-22 107.8 112 58.0
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 6.7e-22 107.5 110 61.8
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.7e-22 107.5 114 64.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.7e-22 107.5 114 64.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.5e-21 106.3 113 60.2
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 2.0e-21 105.9 111 62.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 5.7e-21 104.4 107 58.9
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 7.4e-21 104.0 110 61.8
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.3e-20 103.2 113 61.9
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 6.3e-20 100.9 111 61.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 6.3e-20 100.9 114 58.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 6.3e-20 100.9 111 55.0
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 6.3e-20 100.9 110 58.2
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.8e-19 99.4 109 56.9
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.8e-19 99.4 109 60.6
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.1e-19 98.6 113 52.2
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.1e-19 98.2 112 59.8
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 5.3e-19 97.8 111 58.6
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 6.9e-19 97.4 114 59.6
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 6.9e-19 97.4 108 60.2
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.9e-19 97.4 108 60.2
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 9.1e-19 97.1 111 60.4
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.5e-18 96.3 111 62.2
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.5e-18 96.3 109 57.8
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.5e-18 96.3 109 58.7
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.5e-18 96.3 110 56.4
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.5e-18 96.3 111 55.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 2.6e-18 95.5 113 58.4
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.6e-18 95.5 112 57.1
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.4e-18 95.1 109 57.8
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.5e-18 94.7 111 58.6
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 7.7e-18 94.0 112 58.9
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 7.7e-18 94.0 112 58.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 7.7e-18 94.0 112 58.9
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 7.7e-18 94.0 109 57.8
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 7.7e-18 94.0 111 55.0
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-17 93.6 112 58.0
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-17 93.6 109 56.9
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.0e-17 93.6 117 58.1
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.0e-17 93.6 112 53.6
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.0e-17 93.6 111 54.1
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.3e-17 93.2 106 58.5
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.7e-17 92.8 109 55.0
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.7e-17 92.8 108 58.3
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.7e-17 92.8 114 57.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.7e-17 92.8 110 59.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-17 92.8 109 50.5
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.2e-17 92.4 109 54.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 3.8e-17 91.7 108 54.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.8e-17 91.7 111 56.8
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 5.0e-17 91.3 114 54.4
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 5.0e-17 91.3 116 50.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 6.5e-17 90.9 112 50.0
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 6.5e-17 90.9 112 57.1
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 6.5e-17 90.9 115 54.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 8.5e-17 90.5 109 54.1
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 58.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 56.9
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 56.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 56.9
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 59.6
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 56.9
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 56.0
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 57.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.9e-16 89.4 113 53.1
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.9e-16 89.4 113 54.0
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.2e-16 88.6 100 57.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.2e-16 88.6 107 58.9
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 3.2e-16 88.6 110 52.7
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.2e-16 88.6 108 50.0
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 4.2e-16 88.2 110 54.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.2e-16 88.2 111 55.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.2e-16 87.4 111 55.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 7.2e-16 87.4 109 55.0
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 7.2e-16 87.4 109 50.5
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 7.2e-16 87.4 115 53.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 9.4e-16 87.0 109 49.5
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 9.4e-16 87.0 116 53.4
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 9.4e-16 87.0 115 54.8
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-15 85.9 109 53.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.1e-15 85.9 109 53.2
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 2.7e-15 85.5 111 55.0
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.7e-15 85.5 94 60.6
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.7e-15 85.5 113 53.1
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.6e-15 85.1 109 56.9
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.7e-15 84.7 116 51.7
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.0e-15 84.0 109 53.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.0e-14 83.6 109 53.2
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.4e-14 83.2 112 51.8
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-14 83.2 109 53.2
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.8e-14 82.8 116 50.9
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 49.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.3e-14 82.4 114 50.9
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.3e-14 82.4 110 52.7
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.0e-14 82.0 110 50.9
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.0e-14 82.0 107 49.5
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.0e-14 82.0 107 49.5
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 3.0e-14 82.0 106 47.2
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.9e-14 81.6 109 53.2
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.8e-14 80.5 112 52.7
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 8.8e-14 80.5 114 51.8
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 3.3e-13 78.6 113 50.4
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 5.7e-13 77.8 61 70.5
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 5.7e-13 77.8 109 47.7
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 7.4e-13 77.4 112 50.9
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 9.7e-13 77.0 99 51.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.7e-12 76.3 114 48.2
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 2.2e-12 75.9 106 53.8
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 2.2e-12 75.9 114 50.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.7e-12 75.1 107 51.4
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.3e-12 74.3 115 49.6
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.1e-11 73.6 114 45.6
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.1e-11 73.6 114 45.6
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 5.3e-11 71.2 99 52.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 9.1e-11 70.5 109 48.6
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.2e-10 70.1 111 48.6
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 2.6e-10 68.9 116 45.7
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 3.5e-10 68.6 113 47.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.3e-09 66.6 38 81.6
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-09 66.2 107 44.9
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 1.7e-09 66.2 107 44.9
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.7e-09 66.2 111 47.7
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 2.2e-09 65.9 99 47.5
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.9e-09 65.5 99 50.5
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 2.9e-09 65.5 107 44.9
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 2.9e-09 65.5 40 80.0
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.9e-09 65.5 107 45.8
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 6.5e-09 64.3 113 47.8
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.5e-08 63.2 93 46.2
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.5e-08 62.4 96 46.9
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 3.2e-08 62.0 124 43.5
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.2e-08 62.0 89 48.3
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 5.5e-08 61.2 93 46.2
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.2e-08 60.8 111 40.5
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.6e-07 59.7 40 72.5
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 125 38.4
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 2.7e-07 58.9 107 42.1
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 6.1e-07 57.8 123 40.7
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 115 42.6
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.0e-06 57.0 38 78.9
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.8e-06 56.2 120 40.8
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.8e-06 56.2 39 76.9
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-06 55.8 107 40.2
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 2.3e-06 55.8 112 39.3
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 5.2e-06 54.7 109 41.3
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 6.7e-06 54.3 36 72.2
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 8.8e-06 53.9 95 46.3


User provided reference genes

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