Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.0e-215 752.3 408 100.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 9.3e-149 530.8 403 76.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 3.5e-148 528.9 403 76.2
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.6e-145 520.0 393 77.4
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.3e-131 473.0 419 69.5
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 6.7e-131 471.5 423 68.1
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.7e-124 449.5 413 64.6
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.2e-121 439.9 410 65.4
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 3.6e-116 422.5 407 61.2
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 2.0e-114 416.8 407 61.2
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 5.7e-114 415.2 406 62.1
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 6.3e-113 411.8 415 61.7
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.1e-112 411.0 403 60.0
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.2e-111 407.5 398 61.8
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 3.5e-111 406.0 390 62.1
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 4.5e-111 405.6 391 61.6
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 4.5e-111 405.6 403 60.8
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.0e-110 404.4 405 60.5
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.2e-109 399.4 393 62.6
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 1.2e-108 397.5 401 61.8
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.1e-108 396.7 413 59.8
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 4.4e-106 389.0 411 59.6
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.2e-105 386.7 405 58.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 5.9e-103 378.6 405 58.8
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 5.9e-103 378.6 411 58.9
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 7.7e-103 378.3 406 59.1
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 3.8e-102 375.9 390 59.7
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 5.0e-102 375.6 357 63.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.5e-102 374.8 445 55.3
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-101 374.4 387 61.0
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 1.5e-101 374.0 394 59.9
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 3.2e-101 372.9 404 57.9
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 9.4e-101 371.3 409 56.5
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.6e-100 370.5 369 63.4
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 6.8e-99 365.2 376 60.6
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.0e-98 363.6 402 57.0
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.0e-98 363.6 402 57.0
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 9.7e-98 361.3 368 61.4
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.4e-96 357.5 407 57.5
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 9.1e-96 354.8 454 52.0
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.7e-95 353.2 403 54.6
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.9e-95 352.1 398 56.5
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.2e-94 350.1 404 56.2
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 3.6e-92 342.8 355 60.3
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.6e-90 336.7 419 53.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.3e-89 334.3 414 54.1
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 4.8e-89 332.4 397 53.1
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.3e-89 332.0 413 51.6
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 4.1e-88 329.3 410 52.2
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.0e-87 327.0 419 53.2
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.7e-87 326.6 453 48.8
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.0e-86 322.4 331 60.7
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.6e-84 317.4 403 50.1
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.0e-83 314.7 367 56.1
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.0e-83 314.7 409 51.3
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.5e-82 310.8 414 50.2
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.4e-82 309.3 346 55.8
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.2e-79 301.2 456 46.3
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.5e-79 299.3 323 56.3
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.0e-78 298.1 406 50.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 2.9e-78 296.6 444 45.9
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 6.6e-78 295.4 393 49.4
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.6e-78 295.4 408 50.0
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.1e-77 294.7 414 48.8
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 7.3e-77 292.0 462 46.5
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.1e-76 290.4 452 44.5
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.8e-76 290.0 392 51.3
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.8e-75 287.3 406 49.3
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 3.1e-75 286.6 410 48.3
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 6.8e-75 285.4 457 43.1
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.6e-74 283.5 409 49.4
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.2e-73 280.4 409 47.2
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 2.9e-73 280.0 464 44.4
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 4.1e-72 276.2 409 46.5
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 7.3e-69 265.4 366 47.5
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 4.7e-68 262.7 414 45.2
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.7e-68 262.7 391 46.5
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 5.2e-67 259.2 399 45.1
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.5e-66 257.7 374 46.3
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 2.6e-66 256.9 389 47.3
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.2e-65 253.8 446 43.9
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.9e-65 253.4 420 45.7
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 3.7e-65 253.1 436 44.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.7e-65 253.1 368 47.6
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.9e-64 250.8 411 46.0
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.2e-63 248.1 408 44.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 6.0e-63 245.7 413 43.1
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.0e-62 245.0 370 47.0
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 3.9e-62 243.0 419 42.5
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.6e-61 239.2 374 46.0
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.8e-60 236.9 366 44.0
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.1e-59 235.0 425 44.2
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.1e-59 233.4 394 44.4
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.5e-58 231.1 397 42.6
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 5.8e-58 229.2 392 43.4
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 3.2e-56 223.4 416 40.9
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 6.0e-55 219.2 384 42.4
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.0e-54 218.4 361 42.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-53 213.8 196 67.3
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 8.9e-51 205.3 432 37.7
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.0e-50 204.1 395 39.5
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 7.1e-48 195.7 387 40.3
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.7e-47 193.7 420 38.3
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.0e-46 191.8 395 37.5
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.3e-46 191.4 394 38.3
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 2.5e-45 187.2 394 36.8
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 7.3e-45 185.7 394 38.1
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.6e-44 183.3 366 38.0
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.6e-42 177.2 341 40.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 2.9e-41 173.7 348 37.9
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.3e-38 164.9 307 42.7
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.7e-38 164.5 394 34.5
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.7e-38 164.5 394 34.5
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 5.1e-38 162.9 392 35.7
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 6.6e-38 162.5 394 34.3
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.6e-38 162.5 288 43.8
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.5e-37 161.4 302 39.1
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.9e-37 161.0 417 32.4
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 2.5e-37 160.6 392 36.0
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 2.5e-37 160.6 392 36.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 3.3e-37 160.2 438 34.0
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 2.8e-36 157.1 394 36.3
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 6.2e-36 156.0 203 49.3
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 6.2e-36 156.0 439 32.6
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.7e-33 147.9 392 34.4
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.2e-32 143.7 197 51.8
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.6e-31 139.8 151 58.3
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 5.1e-30 136.3 391 33.8
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 8.7e-30 135.6 250 39.6
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.3e-29 133.7 222 40.1
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 7.4e-29 132.5 392 33.2
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 7.4e-29 132.5 124 64.5
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.4e-27 128.3 393 32.1
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.3e-22 110.9 116 51.7
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.1e-21 108.6 184 38.0
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.3e-21 107.1 206 42.2
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 6.2e-20 102.8 97 63.9
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 5.0e-17 93.2 248 32.7
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.3e-14 84.3 328 31.1
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.9e-14 83.6 72 65.3
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 3.8e-09 67.0 185 29.7
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 5.0e-09 66.6 82 53.7
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 2.5e-08 64.3 222 32.9
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 4.6e-07 60.1 164 28.7
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 7.9e-07 59.3 362 25.7


User provided reference genes

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