Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.2e-233 812.8 402 100.0
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.9e-226 788.9 402 95.5
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.0e-224 783.1 402 95.5
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 8.7e-224 780.0 402 94.5
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.6e-222 775.8 402 94.5
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.1e-222 775.4 402 94.0
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.8e-222 775.0 402 94.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.6e-222 774.6 402 94.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 8.1e-222 773.5 402 93.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.1e-221 773.1 401 93.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 93.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.5
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.3
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 4.0e-221 771.2 402 93.0
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.0e-221 771.2 402 93.3
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 4.0e-221 771.2 402 93.0
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 92.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 93.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 93.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.0e-220 768.8 402 93.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.0e-220 768.8 402 93.0
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.0e-220 768.8 402 93.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 93.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.6e-220 766.9 402 93.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 7.6e-220 766.9 402 92.5
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 93.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 92.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 91.8
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 92.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 92.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 92.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 92.5
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 92.5
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 91.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 92.0
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.3
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 91.3
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.5
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 91.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 91.5
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 91.5
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.8
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.0
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 5.1e-216 754.2 416 88.7
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 6.6e-216 753.8 411 89.5
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.3
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.0
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.5
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.5
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.5e-215 752.7 416 88.5
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 91.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 91.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.3e-214 749.6 417 88.2
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 90.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 90.0
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 90.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 90.5
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.6
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 90.3
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 89.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 89.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 89.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 89.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.6
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.8
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 8.4e-211 736.9 402 88.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 88.1
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.6
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 2.4e-210 735.3 429 84.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.6
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.1
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 88.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 88.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 88.3
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 88.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 88.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 87.1
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 89.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.0e-208 729.9 396 88.4
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 86.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 87.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 3.0e-208 728.4 419 87.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 87.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 87.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 87.3
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 87.1
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 87.1
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 87.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.3e-206 723.0 438 82.2
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 4.8e-206 721.1 441 81.6
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.8e-205 719.2 400 85.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.9e-205 717.2 401 86.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 86.8
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 8.4e-203 710.3 402 87.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 84.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 82.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 8.7e-200 700.3 402 84.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 6.3e-198 694.1 402 85.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 4.1e-197 691.4 375 88.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 8.4e-195 683.7 402 82.6
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-193 677.2 402 81.3
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.9e-192 674.9 402 80.6
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.1e-191 673.3 402 80.8
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.1e-189 666.8 357 89.4
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 7.7e-188 660.6 361 90.0
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 8.5e-187 657.1 360 87.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 8.8e-184 647.1 402 80.3
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.3e-179 633.3 334 92.8
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-179 632.9 401 74.1
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.7e-177 625.5 340 89.7
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 6.1e-177 624.4 402 72.9
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.1e-175 620.2 402 73.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 6.3e-174 614.4 402 72.1
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-172 610.1 403 71.2
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.9e-172 607.8 403 71.2
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.1e-169 599.4 402 75.4
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.9e-163 578.9 402 69.4
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.5e-162 574.7 401 67.6
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 66.3
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 5.5e-154 548.1 289 92.4
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 6.6e-147 524.6 403 69.0
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.3e-146 521.2 419 66.1
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.5e-138 496.1 402 65.2
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.8e-128 463.4 259 85.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.2e-121 440.7 397 54.2
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.0e-115 419.5 395 53.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 2.8e-113 412.9 276 75.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.8e-104 383.6 229 82.5
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.0e-103 380.2 219 85.8
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 3.4e-103 379.4 219 85.4
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 7.6e-103 378.3 219 84.5
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.3e-82 309.3 300 54.0
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.4e-80 304.3 160 90.6
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.4e-80 304.3 167 87.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.4e-56 223.8 116 94.0
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 3.7e-33 146.7 86 83.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.8e-31 139.0 351 28.8
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.9e-30 137.1 350 27.4
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.2e-17 94.4 47 91.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 6.6e-14 82.8 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.1e-12 77.8 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-11 74.7 316 23.4
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 2.1e-07 61.2 355 22.0


User provided reference genes

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