Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 2.6e-59 231.9 118 100.0
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 4.4e-43 177.9 121 79.3
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 4.4e-43 177.9 120 72.5
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 5.8e-43 177.6 119 80.7
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 1.4e-41 172.9 115 75.7
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 1.7e-39 166.0 116 74.1
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 1.7e-39 166.0 116 74.1
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 2.1e-37 159.1 114 69.3
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 2.1e-37 159.1 115 70.4
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 4.7e-37 157.9 114 71.1
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 5.2e-36 154.5 120 65.0
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 8.9e-36 153.7 112 66.1
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 8.9e-36 153.7 120 65.0
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 4.4e-35 151.4 114 65.8
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 4.4e-35 151.4 113 66.4
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 4.4e-35 151.4 114 67.5
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 9.9e-35 150.2 115 66.1
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 9.9e-35 150.2 115 66.1
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 9.9e-35 150.2 115 66.1
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 1.3e-34 149.8 113 65.5
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 4.9e-34 147.9 124 57.3
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 1.1e-33 146.7 115 67.8
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 1.9e-33 146.0 121 62.8
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 7.1e-33 144.1 113 63.7
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 1.6e-32 142.9 118 61.9
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 1.6e-32 142.9 114 64.0
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 2.1e-32 142.5 114 64.9
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.7e-32 142.1 113 62.8
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 3.5e-32 141.7 117 62.4
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 6.0e-32 141.0 113 62.8
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 1.7e-31 139.4 117 59.8
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 2.3e-31 139.0 119 63.0
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 1.1e-30 136.7 115 62.6
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 1.1e-30 136.7 115 62.6
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 1.5e-30 136.3 114 61.4
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 1.5e-30 136.3 116 60.3
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 2.5e-30 135.6 121 59.5
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 2.5e-30 135.6 118 62.7
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 4.3e-30 134.8 136 55.1
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 4.3e-30 134.8 117 59.8
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 4.3e-30 134.8 117 57.3
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 5.6e-30 134.4 120 58.3
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 5.6e-30 134.4 117 58.1
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 9.6e-30 133.7 118 61.0
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 3.6e-29 131.7 103 66.0
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 6.2e-29 131.0 118 59.3
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 8.1e-29 130.6 114 57.0
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 8.1e-29 130.6 120 57.5
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 1.8e-28 129.4 116 59.5
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 5.2e-28 127.9 116 58.6
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 5.2e-28 127.9 119 57.1
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 5.2e-28 127.9 97 64.9
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 5.2e-28 127.9 98 65.3
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 1.2e-27 126.7 114 55.3
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 1.2e-27 126.7 116 56.9
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 2.0e-27 125.9 137 53.3
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 2.6e-27 125.6 131 53.4
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 3.4e-27 125.2 116 56.9
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 5.8e-27 124.4 113 56.6
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 7.6e-27 124.0 111 55.0
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 1.7e-26 122.9 119 52.9
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 2.4e-25 119.0 113 53.1
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 4.2e-25 118.2 114 55.3
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 1.6e-24 116.3 112 54.5
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 2.7e-24 115.5 118 53.4
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 4.6e-24 114.8 107 54.2
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 4.6e-24 114.8 114 53.5
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 6.0e-24 114.4 115 51.3
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 6.0e-24 114.4 117 51.3
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 7.8e-24 114.0 117 51.3
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 1.7e-23 112.8 112 51.8
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 1.7e-23 112.8 98 54.1
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 3.9e-23 111.7 116 53.4
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 1.5e-22 109.8 77 67.5
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 1.9e-22 109.4 111 51.4
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 2.5e-22 109.0 111 51.4
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 2.5e-22 109.0 113 50.4
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 2.5e-22 109.0 92 58.7
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 2.5e-22 109.0 116 49.1
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 4.3e-22 108.2 114 52.6
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 9.6e-22 107.1 116 50.9
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 1.3e-21 106.7 74 68.9
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 1.6e-21 106.3 113 50.4
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 2.8e-21 105.5 111 49.5
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.1e-20 103.6 113 49.6
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.1e-20 103.6 113 49.6
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 9.0e-20 100.5 115 48.7
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 2.0e-19 99.4 116 49.1
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 5.8e-19 97.8 77 59.7
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 4.9e-18 94.7 91 53.8
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 8.4e-18 94.0 110 52.7
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 2.4e-17 92.4 95 54.7
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 4.2e-17 91.7 114 46.5
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 1.6e-16 89.7 100 48.0
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 4.6e-16 88.2 98 49.0
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 7.9e-16 87.4 114 42.1
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 1.0e-15 87.0 116 44.0
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 5.1e-15 84.7 79 51.9
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 1.1e-14 83.6 200 32.5
Haze_25678 Corylus avellana HOM05D007094 ORTHO05D008264 1.5e-14 83.2 108 51.9
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 5.6e-14 81.3 79 49.4
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 1.3e-13 80.1 78 48.7
Sed0018655 Sechium edule HOM05D007094 ORTHO05D008264 8.1e-13 77.4 112 45.5
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 1.8e-12 76.3 117 39.3
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 3.1e-12 75.5 54 63.0
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 5.3e-12 74.7 109 40.4
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 9.0e-12 73.9 79 44.3
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 2.6e-11 72.4 78 44.9
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 2.6e-11 72.4 78 44.9
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 2.2e-10 69.3 81 45.7
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 4.9e-10 68.2 53 62.3
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 5.5e-09 64.7 50 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 9.3e-09 63.9 126 38.1
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 9.3e-09 63.9 64 51.6
SalBow6G5897 Salvia bowleyana HOM05D007094 ORTHO05D008264 8.7e-07 57.4 47 59.6
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 9.6e-06 53.9 119 30.3


User provided reference genes

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