Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 0.0e+00 1452.2 741 100.0
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 0.0e+00 1082.4 703 79.7
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.8e-275 952.6 698 70.2
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 3.5e-271 938.3 775 64.3
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.0e-262 910.2 761 65.2
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 4.3e-261 904.8 712 67.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 9.6e-261 903.7 762 64.0
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 5.3e-259 897.9 752 63.4
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 7.6e-258 894.0 757 62.6
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 1.7e-257 892.9 746 63.5
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.9e-254 881.7 734 63.5
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.3e-253 878.6 732 65.0
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.5e-250 869.8 750 63.7
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.6e-250 869.0 757 61.8
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 6.4e-249 864.4 746 61.7
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.9e-248 862.8 757 63.0
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 7.1e-248 860.9 610 70.2
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 1.3e-244 850.1 706 65.0
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.4e-243 846.7 626 67.9
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.4e-240 836.6 616 68.5
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 4.2e-240 835.1 715 64.6
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 7.1e-240 834.3 665 65.3
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 9.3e-240 833.9 760 61.3
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 7.9e-239 830.9 616 68.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.0e-238 830.5 716 62.2
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.0e-238 830.5 751 59.4
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.3e-238 830.1 757 60.9
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 8.7e-238 827.4 712 63.2
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 5.7e-237 824.7 646 65.0
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 6.2e-236 821.2 628 66.1
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 2.6e-234 815.8 776 59.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 2.6e-234 815.8 748 60.0
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 5.8e-234 814.7 695 62.2
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 4.2e-232 808.5 761 58.5
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.3e-230 803.5 748 59.4
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 6.9e-227 791.2 758 57.8
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 9.0e-227 790.8 640 64.5
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.5e-226 790.0 611 66.8
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 5.9e-226 788.1 757 57.3
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.2e-224 782.3 761 57.3
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 9.4e-224 780.8 745 57.0
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 9.4e-224 780.8 787 56.8
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 3.6e-223 778.9 640 63.0
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 6.1e-223 778.1 693 58.9
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.4e-222 776.9 754 57.3
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 2.3e-222 776.2 755 57.2
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 3.0e-222 775.8 651 62.8
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 6.7e-222 774.6 693 58.7
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 4.3e-221 771.9 599 63.8
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 5.7e-221 771.5 748 57.2
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 2.2e-220 769.6 1052 46.3
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 6.3e-220 768.1 547 68.4
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 8.2e-220 767.7 799 52.9
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 1.8e-219 766.5 721 57.4
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 6.9e-219 764.6 750 56.1
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.9e-219 764.6 754 57.0
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.2e-218 763.8 628 62.9
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 5.9e-218 761.5 669 60.2
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 6.1e-215 751.5 752 55.3
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 2.3e-214 749.6 880 51.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.3e-214 749.6 763 56.4
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 6.7e-214 748.0 754 55.0
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.3e-212 743.8 717 55.0
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.7e-212 743.4 751 55.8
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.8e-212 741.9 753 55.5
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.1e-211 740.7 737 56.6
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.3e-209 733.8 640 60.8
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.7e-209 733.4 631 60.9
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.5e-208 730.3 726 56.6
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 9.4e-208 727.6 590 61.5
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.0e-206 724.2 660 57.1
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-205 720.7 632 60.8
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 5.7e-205 718.4 757 55.6
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.8e-204 716.1 695 56.0
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 3.8e-201 705.7 548 65.3
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 3.6e-199 699.1 628 59.9
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.8e-198 694.5 601 57.2
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.6e-197 693.0 813 51.5
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.4e-195 687.2 706 54.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.0e-193 678.7 618 55.8
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 2.5e-184 649.8 688 51.2
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 3.3e-184 649.4 627 56.9
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.9e-176 623.6 676 54.1
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.2e-175 620.9 718 48.9
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 4.7e-175 619.0 632 50.9
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.4e-174 617.5 558 60.2
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.4e-173 612.8 654 51.7
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 2.9e-172 609.8 621 51.9
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.6e-170 604.0 814 45.7
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.8e-167 593.2 706 48.3
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.5e-162 576.2 576 52.4
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 2.8e-159 566.6 722 43.6
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.2e-155 553.1 589 52.5
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 9.2e-155 551.6 632 48.7
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 7.8e-154 548.5 410 66.6
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 8.6e-153 545.0 589 50.3
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.5e-152 544.3 380 70.8
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 6.9e-142 508.8 403 64.5
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.4e-140 502.3 530 54.5
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-136 491.1 692 45.8
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 2.5e-136 490.3 654 41.9
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.5e-128 463.8 671 43.4
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 1.8e-121 441.0 320 68.1
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.6e-119 434.5 440 58.9
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.7e-116 424.5 293 68.6
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.7e-114 417.2 367 59.7
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 9.1e-110 402.1 329 62.3
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.6e-109 400.6 558 48.0
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.7e-106 390.6 336 57.7
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 3.2e-99 367.1 447 44.5
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 7.9e-98 362.5 503 42.1
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.7e-95 354.8 482 45.9
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 4.8e-95 353.2 526 38.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 9.1e-94 349.0 515 40.6
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.0e-92 345.5 357 51.5
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 4.2e-83 313.5 306 56.5
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.0e-81 307.0 719 33.0
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 1.5e-80 305.1 354 54.2
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 3.5e-77 293.9 313 53.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 2.7e-69 267.7 578 31.0
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.0e-68 265.8 210 63.3
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 8.0e-66 256.1 156 80.8
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.9e-63 247.7 154 77.9
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 2.0e-61 241.5 287 47.4
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.0e-56 224.9 149 74.5
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-56 224.9 147 72.1
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 3.4e-56 224.2 288 46.5
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.4e-56 223.8 135 77.8
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 1.1e-54 219.2 204 59.8
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.5e-51 208.0 227 49.3
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.1e-49 202.6 339 41.0
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.3e-47 195.7 288 44.1
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-46 192.6 244 49.2
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.6e-45 187.2 196 51.0
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.9e-44 184.1 246 47.6
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 4.1e-38 164.1 331 37.2
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.1e-35 156.0 276 42.8
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 6.2e-34 150.2 118 66.9
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.2e-33 147.1 92 77.2
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 8.4e-31 139.8 304 34.2
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.4e-30 139.0 84 78.6
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 4.2e-30 137.5 287 35.2
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.3e-28 132.5 83 75.9
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.1e-26 125.2 86 69.8
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.8e-24 117.1 120 51.7
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.7e-23 115.5 85 62.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-22 112.5 105 60.0
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.2e-22 111.3 92 64.1
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 4.6e-21 107.5 70 74.3
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-19 102.4 74 70.3
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.4e-14 85.9 96 53.1
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-11 76.3 86 47.7
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-09 69.7 97 42.3
Cpa.g.sc86.29 Carica papaya HOM05D000751 ORTHO05D005618 1.7e-07 62.4 125 40.0
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 2.5e-06 58.5 104 34.6


User provided reference genes

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