Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 4.7e-53 211.1 117 100.0
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 5.7e-43 177.6 119 82.4
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 5.9e-40 167.5 113 79.6
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.5e-38 162.9 118 77.1
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 5.5e-38 161.0 114 75.4
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.0e-36 156.8 117 71.8
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.3e-36 155.6 120 70.8
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-36 155.2 120 70.0
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.0e-36 155.2 120 70.0
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 3.0e-36 155.2 118 75.4
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 3.0e-36 155.2 119 71.4
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.0e-36 154.8 119 71.4
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 6.8e-36 154.1 119 71.4
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.8e-36 154.1 119 71.4
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 8.9e-36 153.7 117 72.6
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.5e-35 152.9 113 72.6
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 1.5e-35 152.9 115 71.3
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.0e-35 152.5 118 74.6
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 5.7e-35 151.0 118 72.9
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 5.7e-35 151.0 119 69.7
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 5.7e-35 151.0 120 68.3
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 3.7e-34 148.3 120 73.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 3.7e-34 148.3 120 73.3
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.3e-34 147.5 118 72.0
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 8.3e-34 147.1 120 70.8
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.4e-33 146.4 118 72.9
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.8e-33 146.0 119 68.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.8e-33 146.0 113 73.5
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.4e-33 145.6 118 68.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.4e-33 145.6 121 67.8
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 4.1e-33 144.8 123 69.1
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 5.4e-33 144.4 120 70.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 7.0e-33 144.1 119 68.9
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 9.2e-33 143.7 119 71.4
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.0e-32 142.5 118 67.8
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.5e-32 141.7 118 67.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 3.5e-32 141.7 120 68.3
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 4.5e-32 141.4 121 71.1
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.0e-31 140.2 117 68.4
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.0e-31 140.2 114 70.2
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 1.0e-31 140.2 119 66.4
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.7e-31 139.4 125 65.6
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 2.3e-31 139.0 118 69.5
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 3.8e-31 138.3 120 70.0
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 3.8e-31 138.3 120 69.2
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 5.0e-31 137.9 122 69.7
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 6.6e-31 137.5 113 72.6
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 6.6e-31 137.5 116 65.5
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 8.6e-31 137.1 119 66.4
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-30 136.7 114 68.4
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.1e-30 136.7 120 69.2
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-30 136.3 118 65.3
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.5e-30 135.6 114 67.5
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.5e-30 135.6 113 64.6
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 4.3e-30 134.8 120 66.7
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 5.6e-30 134.4 112 68.8
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.3e-30 134.0 120 65.0
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 7.3e-30 134.0 118 64.4
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 9.5e-30 133.7 119 67.2
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 9.5e-30 133.7 120 68.3
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.2e-29 133.3 103 70.9
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-29 133.3 118 65.3
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.8e-29 132.1 118 67.8
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.8e-29 132.1 118 67.8
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.1e-29 131.0 117 63.2
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 6.1e-29 131.0 117 65.0
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 6.1e-29 131.0 113 66.4
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 8.0e-29 130.6 111 66.7
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.3e-28 129.0 119 63.9
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 2.3e-28 129.0 118 66.1
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.3e-28 129.0 115 67.0
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 5.2e-28 127.9 118 61.9
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.2e-27 126.7 128 59.4
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.2e-27 126.7 118 65.3
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.5e-27 126.3 119 62.2
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 2.6e-27 125.6 118 61.0
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 3.4e-27 125.2 118 60.2
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 3.4e-27 125.2 114 59.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 5.8e-27 124.4 113 60.2
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.2e-26 122.5 117 63.2
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 3.7e-26 121.7 111 63.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 4.9e-26 121.3 114 58.8
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.9e-25 119.4 117 60.7
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.6e-24 114.8 119 57.1
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 7.8e-24 114.0 120 60.0
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 7.8e-24 114.0 121 59.5
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 7.8e-24 114.0 119 58.8
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 7.8e-24 114.0 119 57.1
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 119 57.1
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.0e-23 113.6 118 60.2
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.0e-23 113.6 113 58.4
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 55.5
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 5.0e-23 111.3 121 58.7
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 5.0e-23 111.3 154 49.4
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 5.0e-23 111.3 124 57.3
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 6.6e-23 110.9 113 61.9
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 6.6e-23 110.9 113 56.6
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.5e-22 109.8 120 58.3
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.9e-22 109.4 123 55.3
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.9e-22 109.4 119 55.5
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 119 55.5
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 123 55.3
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.9e-22 109.4 119 55.5
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.9e-22 109.4 123 55.3
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 5.6e-22 107.8 119 56.3
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 5.6e-22 107.8 119 56.3
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 7.3e-22 107.5 120 59.2
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 7.3e-22 107.5 116 56.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 7.3e-22 107.5 113 60.2
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 7.3e-22 107.5 120 57.5
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 9.5e-22 107.1 119 56.3
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 9.5e-22 107.1 116 55.2
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.6e-21 106.3 123 57.7
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.4e-20 103.2 121 57.0
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.8e-20 102.8 120 53.3
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 6.8e-20 100.9 88 63.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.8e-20 100.9 83 65.1
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 8.9e-20 100.5 119 57.1
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.5e-19 99.8 124 52.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.5e-19 99.8 114 52.6
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.0e-19 99.4 118 54.2
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.7e-18 96.3 113 51.3
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 8.3e-18 94.0 69 76.8
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 8.3e-18 94.0 118 52.5
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.8e-16 87.4 84 63.1
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.7e-15 86.3 118 48.3
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-15 85.5 84 61.9
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 5.1e-15 84.7 83 50.6
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 8.6e-15 84.0 107 51.4
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 8.6e-15 84.0 83 50.6
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.1e-14 83.6 115 49.6
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.1e-14 83.6 66 65.2
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.1e-14 83.6 66 65.2
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.5e-14 83.2 81 60.5
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.5e-14 83.2 195 35.4
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.6e-13 78.6 130 41.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 4.7e-13 78.2 47 87.2
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.2e-13 77.8 67 61.2
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 8.1e-13 77.4 79 54.4
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.4e-12 76.6 79 53.2
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 3.1e-12 75.5 68 63.2
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.7e-10 69.7 100 47.0
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.9e-10 68.9 78 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 4.1e-09 65.1 128 39.8
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.6e-08 61.6 113 38.1
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 8.6e-07 57.4 43 69.8
Mapoly0044s0081 Marchantia polymorpha HOM05D004934 ORTHO05D005924 5.6e-06 54.7 109 41.3
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 7.3e-06 54.3 34 82.4
HPP92_003218 Vanilla planifolia HOM05D004934 ORTHO05D005924 7.3e-06 54.3 36 75.0
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 9.5e-06 53.9 39 74.4


User provided reference genes

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