Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.0e-105 386.7 196 100.0
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.6e-40 169.5 185 58.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.3e-39 167.2 187 60.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 3.3e-35 152.5 181 56.9
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.0e-25 119.0 213 41.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 7.6e-24 114.8 188 43.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.7e-23 113.6 196 41.8
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-22 110.5 189 41.3
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.4e-22 110.5 194 40.7
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 7.1e-22 108.2 188 44.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-21 107.1 196 41.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.1e-21 106.7 192 40.1
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.7e-21 106.3 198 42.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.7e-21 106.3 199 42.7
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 7.9e-21 104.8 198 41.9
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.8e-20 103.6 194 44.3
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 3.9e-20 102.4 190 42.1
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.1e-20 102.1 182 40.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.5e-19 100.5 193 39.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-19 100.1 194 41.8
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.3e-19 99.4 195 39.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.3e-19 99.0 194 41.8
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 5.7e-19 98.6 194 41.8
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 7.4e-19 98.2 182 38.5
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 9.7e-19 97.8 194 43.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.8e-18 96.3 186 37.6
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.7e-18 95.9 192 40.1
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.7e-18 95.9 203 39.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 6.3e-18 95.1 192 40.6
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.1e-17 94.4 187 40.1
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.4e-17 94.0 181 40.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.8e-17 93.6 200 37.5
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.1e-17 92.4 186 38.7
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.1e-17 92.4 206 40.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.3e-17 92.0 188 41.5
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 6.9e-17 91.7 178 37.6
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 9.0e-17 91.3 188 37.2
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.0e-17 91.3 192 39.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 9.0e-17 91.3 181 43.6
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.2e-16 90.9 188 39.4
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.5e-16 90.5 199 41.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.0e-16 90.1 193 38.3
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.0e-16 90.1 184 39.1
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.6e-16 89.7 194 39.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.6e-16 89.7 219 35.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.4e-16 89.4 182 40.1
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 4.5e-16 89.0 209 37.3
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.5e-16 89.0 186 38.7
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.0e-15 87.8 182 36.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.3e-15 87.4 183 39.3
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.3e-15 87.4 181 40.9
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.7e-15 87.0 201 35.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.2e-15 86.7 181 34.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-15 86.7 183 36.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-15 86.7 181 34.8
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-15 86.7 181 34.8
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.2e-15 86.7 185 37.3
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.2e-15 86.7 199 35.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.9e-15 86.3 191 34.6
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.9e-15 86.3 190 35.3
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.8e-15 85.9 179 38.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 3.8e-15 85.9 188 37.8
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.8e-15 85.9 197 35.5
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.5e-15 85.1 170 37.1
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.1e-14 84.3 194 35.1
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-14 83.6 184 35.3
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-14 83.6 187 34.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-14 83.6 178 37.6
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-14 83.6 178 37.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-14 83.6 192 38.0
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.5e-14 83.2 190 38.4
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-14 82.8 176 36.4
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.2e-14 82.8 171 36.8
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 4.2e-14 82.4 183 34.4
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.2e-14 82.4 181 38.1
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 4.2e-14 82.4 172 36.6
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.2e-14 82.4 180 35.0
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 5.5e-14 82.0 183 35.0
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 7.2e-14 81.6 188 39.4
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 9.4e-14 81.3 192 34.4
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 9.4e-14 81.3 192 35.9
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-13 80.9 186 34.4
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-13 80.9 187 33.2
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-13 80.9 187 33.2
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-13 80.9 187 33.2
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.2e-13 80.9 189 34.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-13 80.9 181 35.4
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.6e-13 80.5 190 35.8
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 2.1e-13 80.1 197 35.5
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.1e-13 80.1 190 35.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.7e-13 79.7 186 34.4
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-13 79.3 190 35.3
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 3.6e-13 79.3 189 37.6
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 4.6e-13 79.0 198 36.4
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 4.6e-13 79.0 209 32.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 6.1e-13 78.6 183 33.3
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.1e-13 78.6 179 36.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 6.1e-13 78.6 190 35.8
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 6.1e-13 78.6 212 32.1
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 7.9e-13 78.2 182 38.5
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.9e-13 78.2 179 35.8
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.0e-12 77.8 191 35.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-12 77.4 178 34.3
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.4e-12 77.4 235 31.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.8e-12 77.0 191 35.1
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-12 75.9 175 35.4
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.9e-12 75.9 175 35.4
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.9e-12 75.9 180 33.9
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.8e-12 74.7 179 35.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.8e-12 74.7 204 30.4
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.0e-11 73.6 190 33.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.0e-11 73.6 179 33.0
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.5e-11 73.2 190 32.1
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.3e-11 72.4 182 32.4
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.3e-11 72.4 182 34.6
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 4.3e-11 72.4 171 35.7
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 7.4e-11 71.6 200 35.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 7.4e-11 71.6 191 34.0
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 9.7e-11 71.2 181 33.7
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 9.7e-11 71.2 179 35.8
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-10 70.9 183 35.0
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-10 70.9 183 35.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.7e-10 70.5 196 32.7
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-10 70.1 182 34.1
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.8e-10 69.7 179 33.5
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.8e-10 69.7 190 31.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.7e-10 69.3 187 36.9
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-10 69.3 183 34.4
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-10 69.3 184 33.7
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 3.7e-10 69.3 189 34.4
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.4e-09 67.4 172 37.8
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.8e-09 67.0 191 31.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-09 66.6 186 29.6
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 3.1e-09 66.2 184 35.9
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.3e-09 65.5 178 36.5
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 6.9e-09 65.1 186 37.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 6.9e-09 65.1 147 37.4
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-08 64.3 220 30.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.2e-08 64.3 154 37.0
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.2e-08 64.3 180 31.7
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.5e-08 63.9 180 31.7
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-08 63.5 181 32.6
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-08 63.5 181 32.6
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.0e-08 63.5 172 30.8
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.0e-08 63.5 193 34.2
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.0e-08 63.5 186 31.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.6e-08 63.2 172 31.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.5e-08 62.4 189 33.3
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 7.7e-08 61.6 167 32.9
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.3e-07 60.8 211 28.4
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-07 60.5 181 32.6
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.2e-07 60.1 192 33.9
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.8e-07 59.3 49 59.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 5.0e-07 58.9 197 28.9
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 1.1e-06 57.8 167 29.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.4e-06 57.4 179 28.5


User provided reference genes

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