Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 6.3e-117 425.2 210 100.0
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.1e-84 318.2 210 75.2
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.1e-83 313.9 210 73.3
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 5.1e-74 282.7 199 72.4
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 1.8e-58 231.1 209 58.4
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 6.9e-55 219.2 211 55.5
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 2.0e-54 217.6 210 54.3
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 6.5e-53 212.6 211 52.6
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.6e-51 208.0 208 53.8
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 2.7e-51 207.2 210 52.4
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.9e-50 203.4 208 53.4
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 6.7e-50 202.6 210 51.9
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 3.1e-47 193.7 210 48.1
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 4.1e-47 193.4 207 51.2
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 7.7e-46 189.1 207 51.2
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.5e-41 174.1 210 45.7
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 4.3e-41 173.3 210 43.3
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 2.2e-40 171.0 211 47.4
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 2.8e-40 170.6 211 46.9
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.8e-40 169.9 209 45.9
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 4.8e-40 169.9 212 41.5
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 4.8e-40 169.9 211 46.9
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 8.2e-40 169.1 211 46.9
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 9.1e-39 165.6 209 45.5
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 9.1e-39 165.6 209 45.0
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.5e-38 164.9 208 44.2
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.9e-38 162.9 200 45.5
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.3e-37 161.8 201 42.8
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.2e-37 161.0 210 43.3
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.8e-37 160.2 215 40.9
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.4e-36 158.3 210 42.9
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 9.4e-36 155.6 209 45.0
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.4e-34 151.8 204 41.2
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 3.0e-34 150.6 209 44.0
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.6e-33 147.5 212 41.0
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 3.3e-33 147.1 217 43.8
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 7.4e-33 146.0 195 43.6
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 9.7e-33 145.6 213 44.6
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.4e-31 141.7 200 40.5
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 2.4e-31 141.0 92 71.7
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 3.1e-31 140.6 189 40.2
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 9.1e-31 139.0 210 40.0
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 4.5e-30 136.7 210 39.0
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 7.7e-30 136.0 163 49.7
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.7e-29 134.8 210 39.5
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.7e-29 134.8 237 37.6
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 8.5e-29 132.5 199 36.7
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 7.2e-28 129.4 178 40.4
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.2e-27 128.6 192 38.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 3.6e-27 127.1 211 35.1
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 4.7e-27 126.7 209 36.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.0e-26 125.6 210 33.8
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 3.9e-26 123.6 200 33.0
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 6.7e-26 122.9 201 36.8
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.0e-25 121.3 210 32.9
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 5.7e-25 119.8 171 38.0
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.3e-24 118.6 182 36.8
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.2e-24 117.9 176 36.9
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 8.2e-24 115.9 185 35.1
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 1.1e-23 115.5 204 35.3
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 1.1e-23 115.5 209 33.5
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 3.1e-23 114.0 199 33.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.0e-23 112.8 188 37.2
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 2.6e-22 110.9 185 33.0
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 4.5e-22 110.2 182 33.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 7.7e-22 109.4 201 32.8
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.7e-21 108.2 202 32.7
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.7e-21 108.2 212 35.4
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.2e-21 107.8 129 51.2
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.8e-21 107.1 155 34.8
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.8e-21 107.1 185 34.6
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.8e-21 107.1 185 34.6
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 3.8e-21 107.1 208 31.7
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 5.0e-21 106.7 188 38.8
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 5.0e-21 106.7 181 34.3
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 5.0e-21 106.7 203 33.0
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 8.5e-21 105.9 185 34.6
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 8.5e-21 105.9 210 31.9
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-20 105.5 209 32.1
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.5e-20 104.4 209 32.1
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.2e-20 104.0 173 35.8
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 3.2e-20 104.0 185 33.5
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 3.2e-20 104.0 181 33.7
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.2e-20 104.0 104 48.1
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.2e-20 103.6 208 30.3
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 7.2e-20 102.8 191 33.5
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.6e-19 101.7 207 31.9
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.7e-19 100.9 143 39.2
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 2.7e-19 100.9 208 30.8
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 3.6e-19 100.5 197 32.5
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.1e-19 99.8 158 34.2
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.3e-18 97.8 103 49.5
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 5.2e-18 96.7 208 28.8
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 8.8e-18 95.9 188 32.4
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.2e-17 95.5 190 30.5
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.2e-17 95.5 99 45.5
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.5e-17 95.1 109 39.4
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 3.4e-17 94.0 205 30.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 7.5e-17 92.8 200 31.5
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.7e-16 91.7 181 30.4
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 8.3e-16 89.4 201 29.9
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-15 89.0 138 32.6
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 1.4e-15 88.6 166 35.5
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.4e-15 88.6 180 31.7
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.1e-15 87.4 204 30.4
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 7.0e-15 86.3 162 31.5
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 7.0e-15 86.3 179 29.6
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 9.1e-15 85.9 157 32.5
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 9.1e-15 85.9 206 31.1
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.2e-14 85.5 190 32.1
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.0e-14 84.7 185 32.4
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 2.7e-14 84.3 155 29.0
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 3.5e-14 84.0 185 27.6
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.0e-13 82.4 136 35.3
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.9e-13 80.9 162 34.0
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 5.0e-13 80.1 168 30.4
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 5.0e-13 80.1 137 31.4
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 8.5e-13 79.3 143 35.0
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.9e-12 78.2 214 28.5
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.9e-12 78.2 158 31.6
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.5e-12 77.8 208 28.4
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 9.4e-12 75.9 194 27.8
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 2.1e-11 74.7 216 28.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 3.6e-11 73.9 175 31.4
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 4.7e-11 73.6 202 29.2
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 6.1e-11 73.2 158 31.0
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 8.0e-11 72.8 54 57.4
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.0e-10 72.4 175 29.1
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.8e-10 71.6 177 31.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 5.2e-10 70.1 208 28.8
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 8.8e-10 69.3 214 27.6
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.5e-09 68.6 209 25.8
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 2.6e-09 67.8 216 28.7
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 2.6e-09 67.8 214 27.1
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 7.5e-09 66.2 208 28.4
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 1.7e-08 65.1 64 45.3
EL10Ac9g22566 Beta vulgaris HOM05D004255 ORTHO05D004815 6.3e-08 63.2 52 55.8
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 6.3e-08 63.2 64 43.8
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 8.3e-08 62.8 105 30.5
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 4.1e-07 60.5 74 39.2
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 7.0e-07 59.7 115 31.3
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 5.9e-06 56.6 152 25.0


User provided reference genes

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