Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 7.1e-161 570.5 274 100.0
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.6e-115 419.1 257 78.2
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 8.0e-104 380.9 270 63.3
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 1.0e-103 380.6 267 66.3
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 5.2e-103 378.3 270 64.1
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 5.2e-103 378.3 270 64.8
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 1.2e-102 377.1 267 66.3
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 4.4e-102 375.2 259 68.3
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 9.8e-102 374.0 270 64.4
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 2.2e-101 372.9 269 65.1
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 4.8e-101 371.7 270 64.8
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 1.4e-100 370.2 271 65.7
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 1.8e-100 369.8 270 64.1
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 2.4e-100 369.4 267 64.8
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 2.4e-100 369.4 261 65.9
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 2.4e-100 369.4 261 66.3
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.1e-100 369.0 270 64.1
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 1.6e-99 366.7 261 65.1
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.0e-98 364.0 271 63.8
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 2.3e-98 362.8 250 66.0
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 5.0e-98 361.7 271 63.1
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 4.2e-97 358.6 262 63.7
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 1.6e-96 356.7 270 62.2
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 2.1e-96 356.3 267 61.8
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 2.1e-96 356.3 261 63.2
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 6.1e-96 354.8 279 60.9
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.8e-95 353.2 270 60.4
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 1.8e-95 353.2 270 60.4
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.3e-95 352.8 252 65.1
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 6.8e-95 351.3 270 60.4
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 8.8e-95 350.9 264 63.6
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.5e-94 350.1 269 59.5
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.6e-94 349.4 325 54.2
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.6e-94 349.4 270 60.4
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.7e-93 346.7 268 62.7
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.2e-93 346.3 268 63.1
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 8.3e-93 344.4 270 60.7
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 7.0e-92 341.3 251 62.5
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 1.3e-90 337.0 250 61.6
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 2.9e-90 335.9 255 62.4
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 1.5e-89 333.6 278 56.8
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 3.6e-88 328.9 263 61.2
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 2.0e-83 313.2 238 60.5
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 1.2e-78 297.4 265 55.8
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 1.3e-77 293.9 215 64.7
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 5.4e-76 288.5 256 52.0
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 5.4e-76 288.5 261 54.8
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 2.3e-74 283.1 270 53.3
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 1.1e-73 280.8 207 64.3
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 1.1e-73 280.8 270 50.0
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 9.5e-73 277.7 261 52.9
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.6e-72 276.9 224 58.0
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 1.4e-71 273.9 220 63.6
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 5.8e-70 268.5 220 58.6
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 3.7e-69 265.8 195 62.6
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 5.4e-68 261.9 254 51.2
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 6.0e-67 258.5 268 51.9
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 1.2e-64 250.8 208 58.2
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.2e-64 250.8 213 57.7
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 6.2e-64 248.4 154 73.4
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 6.4e-61 238.4 161 65.2
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.2e-59 234.2 261 44.1
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.6e-56 222.6 259 42.1
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.1e-55 219.5 259 42.1
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 5.2e-55 218.8 259 42.1
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 3.4e-54 216.1 259 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 7.6e-54 214.9 270 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.7e-53 213.8 260 41.9
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 3.8e-53 212.6 176 59.1
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 4.9e-53 212.2 258 38.8
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 3.9e-50 202.6 120 70.0
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 4.0e-47 192.6 225 46.2
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 2.7e-43 179.9 145 60.0
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 2.5e-41 173.3 251 34.3
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 9.0e-39 164.9 93 83.9
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 6.4e-37 158.7 266 30.5
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 4.2e-36 156.0 262 29.4
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 4.2e-36 156.0 262 29.4
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 4.3e-33 146.0 82 79.3
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 2.3e-26 123.6 81 69.1
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 3.0e-26 123.2 74 68.9
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 5.1e-26 122.5 81 66.7
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 1.7e-21 107.5 81 58.0
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 1.7e-21 107.5 81 58.0
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 2.3e-18 97.1 82 53.7
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 6.9e-15 85.5 132 36.4
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 3.3e-09 66.6 50 58.0
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.8e-08 62.8 44 63.6


User provided reference genes

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