Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 1.8e-131 473.0 287 100.0
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 1.4e-35 154.5 290 42.4
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 5.1e-33 146.0 291 42.3
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 3.9e-25 119.8 323 36.5
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 4.4e-21 106.3 143 51.0
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 9.6e-16 88.6 284 34.5
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 3.1e-14 83.6 96 57.3
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 6.9e-14 82.4 105 51.4
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 2.0e-13 80.9 215 37.7
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 4.5e-13 79.7 147 42.9
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 7.6e-13 79.0 147 38.8
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 1.3e-12 78.2 255 32.9
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 2.9e-12 77.0 119 46.2
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 3.8e-12 76.6 81 54.3
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 6.4e-12 75.9 74 60.8
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.4e-11 74.7 223 34.1
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 4.2e-11 73.2 69 62.3
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 1.2e-10 71.6 252 31.7
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 1.2e-10 71.6 246 37.8
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 1.6e-10 71.2 81 55.6
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 3.5e-10 70.1 224 34.8
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 7.9e-10 68.9 149 38.3
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 1.0e-09 68.6 232 33.6
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 1.3e-09 68.2 224 34.4
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 1.3e-09 68.2 246 37.8
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 1.8e-09 67.8 77 54.5
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.8e-09 67.8 224 30.4
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.8e-09 67.8 196 32.7
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 3.9e-09 66.6 58 63.8
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 6.7e-09 65.9 119 38.7
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 1.1e-08 65.1 68 50.0
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.1e-08 65.1 218 33.0
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 1.5e-08 64.7 152 37.5
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.5e-08 64.7 110 40.9
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 1.9e-08 64.3 254 31.1
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 2.5e-08 63.9 83 50.6
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 2.5e-08 63.9 64 53.1
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 3.3e-08 63.5 105 44.8
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 4.3e-08 63.2 68 57.4
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 5.6e-08 62.8 93 48.4
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 7.4e-08 62.4 143 37.8
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 7.4e-08 62.4 69 56.5
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 9.6e-08 62.0 145 37.2
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.3e-07 61.6 198 35.4
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 1.3e-07 61.6 77 50.6
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 1.3e-07 61.6 77 50.6
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 1.6e-07 61.2 68 50.0
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 2.1e-07 60.8 239 29.7
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 2.1e-07 60.8 245 31.4
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 2.1e-07 60.8 93 46.2
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 2.1e-07 60.8 211 31.8
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 2.1e-07 60.8 51 60.8
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 2.8e-07 60.5 155 37.4
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 3.7e-07 60.1 56 55.4
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 3.7e-07 60.1 67 50.7
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 3.7e-07 60.1 70 57.1
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 4.8e-07 59.7 79 53.2
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 6.2e-07 59.3 111 38.7
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 8.1e-07 58.9 257 30.4
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.1e-06 58.5 71 46.5
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 1.1e-06 58.5 244 31.6
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 1.1e-06 58.5 56 53.6
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 1.4e-06 58.2 73 49.3
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.4e-06 58.2 70 50.0
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 1.4e-06 58.2 74 44.6
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 1.4e-06 58.2 74 44.6
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 1.4e-06 58.2 74 44.6
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.4e-06 58.2 229 28.4
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 1.4e-06 58.2 69 49.3
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.8e-06 57.8 163 30.7
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 1.8e-06 57.8 71 45.1
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 2.4e-06 57.4 257 30.7
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 2.4e-06 57.4 71 43.7
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 3.1e-06 57.0 195 36.4
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 3.1e-06 57.0 71 50.7
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 4.0e-06 56.6 250 30.8
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 4.0e-06 56.6 133 34.6
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 4.0e-06 56.6 109 33.9
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 5.3e-06 56.2 68 51.5
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 5.3e-06 56.2 62 53.2
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 9.0e-06 55.5 70 51.4
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 9.0e-06 55.5 87 42.5


User provided reference genes

Program Settings