Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.0e-99 364.8 186 100.0
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 9.4e-64 247.3 182 75.3
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.4e-59 232.6 173 72.8
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 3.8e-57 225.3 184 69.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.0e-53 213.0 184 66.8
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.3e-52 210.3 185 64.3
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.1e-51 207.2 191 62.8
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.1e-51 207.2 187 63.6
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.1e-51 205.7 184 64.7
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.1e-51 205.3 183 64.5
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 9.1e-51 204.1 190 61.1
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 4.5e-50 201.8 186 62.4
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 4.5e-50 201.8 186 62.4
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 4.5e-50 201.8 186 62.4
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.3e-49 200.3 179 64.2
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.8e-49 198.7 191 62.3
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 3.8e-49 198.7 185 61.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 6.5e-49 198.0 186 62.4
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 4.2e-48 195.3 186 61.3
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 7.2e-48 194.5 188 61.2
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 7.2e-48 194.5 186 63.4
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 9.4e-48 194.1 186 60.8
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 6.1e-47 191.4 189 61.9
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.1e-47 191.4 201 59.7
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 8.0e-47 191.0 186 62.4
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 6.7e-46 188.0 190 58.4
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 8.8e-46 187.6 186 56.5
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 8.8e-46 187.6 186 58.6
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.0e-45 186.4 185 58.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 7.4e-45 184.5 181 58.6
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 9.7e-45 184.1 187 57.2
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 9.7e-45 184.1 188 55.9
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.7e-44 182.2 189 56.6
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 4.8e-44 181.8 187 56.7
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.8e-44 181.8 181 60.8
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.8e-44 181.8 193 58.0
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 6.3e-44 181.4 188 58.5
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.8e-43 179.9 182 58.2
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.4e-43 179.5 188 58.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 2.4e-43 179.5 182 58.2
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 7.0e-43 177.9 184 59.2
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 9.1e-43 177.6 186 57.5
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 4.5e-42 175.3 185 56.8
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.0e-41 174.1 181 58.6
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.1e-40 170.6 188 55.9
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 9.4e-40 167.5 188 53.7
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.2e-39 167.2 184 56.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 3.6e-39 165.6 186 55.9
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 4.7e-39 165.2 179 54.7
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 8.0e-39 164.5 178 55.6
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.4e-38 163.7 186 54.8
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.4e-38 163.7 183 58.5
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.4e-38 163.7 185 56.2
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 3.0e-38 162.5 191 55.5
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 8.8e-38 161.0 186 52.2
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.2e-37 160.6 179 57.0
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.0e-37 159.8 99 83.8
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 2.6e-37 159.5 182 54.4
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 3.3e-37 159.1 186 52.7
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 3.3e-37 159.1 189 51.3
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.3e-36 157.1 179 54.2
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 4.8e-36 155.2 180 53.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 8.3e-36 154.5 191 52.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.4e-35 153.7 186 52.7
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.4e-35 153.7 177 54.2
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 3.1e-35 152.5 190 53.2
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 4.1e-35 152.1 181 53.0
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 9.1e-35 151.0 190 50.5
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 9.1e-35 151.0 187 50.8
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.7e-34 149.4 187 49.7
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 2.7e-34 149.4 186 52.2
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 3.5e-34 149.1 189 51.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 3.5e-34 149.1 189 52.9
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.5e-34 149.1 189 53.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 4.5e-34 148.7 187 52.9
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 5.9e-34 148.3 189 52.4
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 1.7e-33 146.7 185 53.5
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 5.0e-33 145.2 188 50.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 8.5e-33 144.4 186 52.2
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 8.5e-33 144.4 191 53.4
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.5e-32 143.7 185 50.8
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 3.2e-32 142.5 188 50.5
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 5.5e-32 141.7 201 49.8
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 7.2e-32 141.4 183 51.9
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 7.2e-32 141.4 190 49.5
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 3.6e-31 139.0 182 51.6
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.6e-31 139.0 178 51.1
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.6e-31 139.0 178 51.1
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 3.0e-30 136.0 186 48.4
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 5.2e-30 135.2 203 49.8
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 8.8e-30 134.4 184 49.5
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.8e-30 134.4 169 53.3
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.7e-28 130.2 183 47.0
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.7e-28 129.0 188 48.4
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.8e-27 126.7 169 51.5
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.6e-26 123.6 190 46.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.0e-26 123.2 188 45.7
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 3.5e-26 122.5 188 46.8
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 4.5e-26 122.1 169 50.3
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 5.9e-26 121.7 187 46.5
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.0e-25 120.9 168 47.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.3e-25 120.6 183 43.7
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 2.5e-24 116.3 188 46.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 2.5e-24 116.3 188 46.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 2.5e-24 116.3 188 46.3
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 5.5e-24 115.2 174 44.8
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 5.5e-24 115.2 185 46.5
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 5.5e-24 115.2 100 69.0
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.2e-23 114.0 202 43.1
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.6e-23 113.6 137 54.0
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.7e-23 112.1 153 46.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 8.0e-23 111.3 189 44.4
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.0e-22 110.9 186 45.2
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.8e-22 110.2 75 72.0
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 3.0e-22 109.4 172 45.9
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-21 107.5 172 45.3
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 4.9e-20 102.1 227 37.4
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.4e-19 99.8 188 42.6
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.2e-18 97.4 82 64.6
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.8e-18 94.7 178 41.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.0e-17 94.4 178 41.0
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.9e-17 92.4 149 43.0
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 5.0e-17 92.0 175 41.7
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 8.6e-17 91.3 151 45.0
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.1e-16 90.9 134 44.0
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.5e-16 89.7 175 41.7
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.8e-15 86.3 73 65.8
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.7e-15 85.5 178 38.2
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 8.0e-15 84.7 147 42.2
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.5e-13 80.5 182 36.8
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 6.4e-12 75.1 171 39.2
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 8.3e-12 74.7 140 40.7
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.2e-11 72.8 62 62.9
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 4.1e-11 72.4 189 35.4
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 4.6e-10 68.9 144 39.6
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 1.3e-09 67.4 137 36.5
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 2.3e-09 66.6 148 37.2
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 5.0e-09 65.5 191 29.3
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 3.3e-08 62.8 213 33.8
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 5.6e-08 62.0 88 46.6
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 5.6e-08 62.0 60 58.3
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 1.2e-07 60.8 224 32.1
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 2.1e-07 60.1 140 37.9
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 4.0e-06 55.8 89 44.9


User provided reference genes

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