Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 2.8e-55 218.4 110 100.0
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.5e-32 142.9 112 73.2
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 1.8e-30 136.0 106 72.6
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 2.3e-30 135.6 113 69.0
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.4e-19 97.8 112 54.5
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.5e-16 89.7 105 53.3
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.3e-16 88.6 100 56.0
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.3e-16 87.4 105 55.2
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 9.6e-16 87.0 98 57.1
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.2e-15 86.7 105 55.2
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 6.2e-15 84.3 103 53.4
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 6.2e-15 84.3 106 50.0
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.4e-14 83.2 105 54.3
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 3.1e-14 82.0 102 49.0
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 1.2e-13 80.1 98 51.0
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 2.0e-13 79.3 86 55.8
Glyma.18G065800 Glycine max HOM05D010371 ORTHO05D003507 2.0e-13 79.3 98 53.1
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.0e-13 79.3 108 46.3
TPR.G24023 Trifolium pratense HOM05D010371 ORTHO05D003507 2.6e-13 79.0 101 50.5
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 5.8e-13 77.8 97 50.5
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 5.8e-13 77.8 115 49.6
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 7.6e-13 77.4 114 50.0
CANSAT54G0898 Cannabis sativa HOM05D004233 ORTHO05D003507 9.9e-13 77.0 124 44.4
Phvul.006G065200 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 1.3e-12 76.6 93 49.5
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.3e-12 76.6 84 58.3
Glyma.11G176100 Glycine max HOM05D010371 ORTHO05D003507 1.7e-12 76.3 83 54.2
Ca_05588_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 2.2e-12 75.9 101 48.5
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 3.8e-12 75.1 97 49.5
LjContig00155g0017503 Lotus japonicus HOM05D010371 ORTHO05D003507 3.8e-12 75.1 105 49.5
Glyma.14G192400 Glycine max HOM05D010371 ORTHO05D003507 4.9e-12 74.7 97 46.4
Lj6g0011323 Lotus japonicus HOM05D010371 ORTHO05D003507 4.9e-12 74.7 99 44.4
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 4.9e-12 74.7 112 46.4
VMungo0647G2148 Vigna mungo HOM05D010371 ORTHO05D003507 4.9e-12 74.7 98 48.0
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 8.4e-12 73.9 102 49.0
Glyma.02G225600 Glycine max HOM05D010371 ORTHO05D003507 8.4e-12 73.9 97 48.5
VMungo0540G0421 Vigna mungo HOM05D010371 ORTHO05D003507 1.1e-11 73.6 98 46.9
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 1.4e-11 73.2 109 45.0
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.4e-11 73.2 94 53.2
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.9e-11 72.8 98 51.0
Manes.02G121400 Manihot esculenta HOM05D004233 ORTHO05D003507 3.2e-11 72.0 106 43.4
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 4.2e-11 71.6 99 49.5
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 4.2e-11 71.6 87 51.7
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 4.2e-11 71.6 89 52.8
Medtr5g069980 Medicago truncatula HOM05D010371 ORTHO05D003507 5.4e-11 71.2 102 49.0
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 7.1e-11 70.9 113 46.9
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 1.2e-10 70.1 104 46.2
Lalb_Chr04g0252311 Lupinus albus HOM05D010371 ORTHO05D003507 1.6e-10 69.7 105 47.6
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 1.6e-10 69.7 105 49.5
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 2.1e-10 69.3 91 46.2
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.1e-10 69.3 86 51.2
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.7e-10 68.9 112 45.5
Lalb_Chr10g0103281 Lupinus albus HOM05D010371 ORTHO05D003507 2.7e-10 68.9 105 46.7
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 3.5e-10 68.6 103 46.6
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.5e-10 68.6 113 45.1
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 4.6e-10 68.2 113 45.1
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 6.0e-10 67.8 86 48.8
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.0e-10 67.8 114 44.7
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.8e-10 67.4 86 50.0
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.8e-10 67.4 86 50.0
Dinv26880 Davidia involucrata HOM05D004233 ORTHO05D003507 1.0e-09 67.0 78 51.3
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 1.0e-09 67.0 118 44.1
arahy.Tifrunner.gnm1.ann1.0452KN Arachis hypogaea HOM05D010371 ORTHO05D003507 1.3e-09 66.6 102 45.1
arahy.Tifrunner.gnm1.ann1.N7G3Q4 Arachis hypogaea HOM05D010371 ORTHO05D003507 1.7e-09 66.2 99 44.4
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.7e-09 66.2 89 46.1
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.7e-09 66.2 90 47.8
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 3.0e-09 65.5 114 43.0
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 3.0e-09 65.5 112 41.1
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-09 65.5 81 53.1
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-09 65.5 81 53.1
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-09 65.5 76 56.6
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.0e-09 65.5 81 53.1
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.0e-09 65.5 76 56.6
PGR119G2229 Punica granatum HOM05D004233 ORTHO05D003507 3.0e-09 65.5 95 41.1
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.9e-09 65.1 76 56.6
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 3.9e-09 65.1 97 48.5
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 5.1e-09 64.7 87 49.4
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 6.6e-09 64.3 109 45.0
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 6.6e-09 64.3 99 47.5
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 6.6e-09 64.3 111 41.4
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 8.7e-09 63.9 112 43.8
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 1.1e-08 63.5 110 43.6
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 1.5e-08 63.2 113 42.5
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-08 63.2 87 50.6
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-08 63.2 87 50.6
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.5e-08 63.2 87 50.6
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 1.9e-08 62.8 106 41.5
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 2.5e-08 62.4 111 40.5
PSO339G4028 Papaver somniferum HOM05D004233 ORTHO05D003507 2.5e-08 62.4 133 42.1
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 4.3e-08 61.6 92 47.8
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 4.3e-08 61.6 98 44.9
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 4.3e-08 61.6 98 44.9
FvH4_3g38251 Fragaria vesca HOM05D012510 ORTHO05D015115 5.6e-08 61.2 113 44.2
FAN05G3657 Fragaria x ananassa HOM05D004233 ORTHO05D003507 5.6e-08 61.2 111 39.6
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 5.6e-08 61.2 89 47.2
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 5.6e-08 61.2 77 49.4
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 7.3e-08 60.8 93 46.2
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 7.3e-08 60.8 97 46.4
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 7.3e-08 60.8 91 44.0
Migut.N00891 Erythranthe guttata HOM05D004233 ORTHO05D003507 7.3e-08 60.8 93 43.0
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 7.3e-08 60.8 111 39.6
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 7.3e-08 60.8 111 39.6
FAN11G2990 Fragaria x ananassa HOM05D012510 ORTHO05D015115 7.3e-08 60.8 113 44.2
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 7.3e-08 60.8 111 39.6
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 7.3e-08 60.8 111 39.6
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 9.6e-08 60.5 93 44.1
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 9.6e-08 60.5 76 48.7
Sed0004609 Sechium edule HOM05D025966 ORTHO05D003507 9.6e-08 60.5 90 43.3
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 9.6e-08 60.5 107 40.2
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 1.3e-07 60.1 93 46.2
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 1.3e-07 60.1 114 41.2
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 1.3e-07 60.1 94 45.7
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 1.3e-07 60.1 89 46.1
Medtr7g067365 Medicago truncatula HOM05D004233 ORTHO05D003507 1.3e-07 60.1 78 48.7
Sabra09G0030900 Salix brachista HOM05D004233 ORTHO05D003507 1.3e-07 60.1 66 53.0
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 1.6e-07 59.7 114 39.5
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 1.6e-07 59.7 114 39.5
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.1e-07 59.3 93 43.0
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 2.1e-07 59.3 114 39.5
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 2.1e-07 59.3 113 40.7
CsaV3_6G016360 Cucumis sativus L. HOM05D025966 ORTHO05D003507 2.8e-07 58.9 96 42.7
Lalb_Chr13g0291241 Lupinus albus HOM05D004233 ORTHO05D003507 2.8e-07 58.9 88 45.5
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 2.8e-07 58.9 115 40.9
Oeu030524.1 Olea europaea HOM05D004233 ORTHO05D003507 2.8e-07 58.9 112 42.0
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 3.6e-07 58.5 93 46.2
MELO3C025866.2 Cucumis melo HOM05D025966 ORTHO05D003507 3.6e-07 58.5 92 44.6
TPR.G1552 Trifolium pratense HOM05D004233 ORTHO05D003507 3.6e-07 58.5 102 40.2
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 6.2e-07 57.8 93 45.2
Oeu055173.1 Olea europaea HOM05D004233 ORTHO05D003507 6.2e-07 57.8 109 38.5
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 6.2e-07 57.8 89 46.1
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 8.1e-07 57.4 105 42.9
Lj6g0009965 Lotus japonicus HOM05D004233 ORTHO05D003507 8.1e-07 57.4 65 47.7
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 8.1e-07 57.4 81 45.7
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 1.1e-06 57.0 80 48.8
Nn2g11404 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.1e-06 57.0 108 38.9
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.1e-06 57.0 93 44.1
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.1e-06 57.0 94 45.7
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 1.1e-06 57.0 93 45.2
CANSAT35G0502 Cannabis sativa HOM05D004233 ORTHO05D003507 1.4e-06 56.6 80 45.0
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 1.4e-06 56.6 96 42.7
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 1.4e-06 56.6 69 49.3
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 1.8e-06 56.2 109 36.7
PSO384G2407 Papaver somniferum HOM05D004233 ORTHO05D003507 1.8e-06 56.2 127 38.6
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 1.8e-06 56.2 113 41.6
Sed0007794 Sechium edule HOM05D025966 ORTHO05D003507 1.8e-06 56.2 106 42.5
arahy.Tifrunner.gnm1.ann1.BL7XQ3 Arachis hypogaea HOM05D004233 ORTHO05D003507 2.4e-06 55.8 102 37.3
Lsat_1_v5_gn_5_172261 Lactuca sativa HOM05D004233 ORTHO05D003507 2.4e-06 55.8 100 40.0
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 2.4e-06 55.8 89 43.8
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 3.1e-06 55.5 96 46.9
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 3.1e-06 55.5 92 41.3
FAN25G2257 Fragaria x ananassa HOM05D012510 ORTHO05D015115 3.1e-06 55.5 115 43.5
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 4.0e-06 55.1 91 44.0
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 4.0e-06 55.1 93 41.9
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 4.0e-06 55.1 93 41.9
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 4.0e-06 55.1 94 42.6
Lalb_Chr03g0043081 Lupinus albus HOM05D004233 ORTHO05D003507 4.0e-06 55.1 67 49.3
SalBow4G1886 Salvia bowleyana HOM05D004233 ORTHO05D003507 4.0e-06 55.1 71 52.1
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 6.9e-06 54.3 101 42.6
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 9.0e-06 53.9 115 40.9
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 9.0e-06 53.9 115 40.9
Glyma.13G239800 Glycine max HOM05D004233 ORTHO05D003507 9.0e-06 53.9 90 44.4


User provided reference genes

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