Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 6.9e-67 257.3 143 100.0
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 6.1e-63 244.2 143 90.2
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 8.0e-63 243.8 141 94.3
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 6.7e-62 240.7 143 91.6
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 6.7e-62 240.7 142 93.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 2.6e-61 238.8 143 91.6
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 3.3e-61 238.4 143 90.9
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 3.3e-61 238.4 143 91.6
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 7.4e-61 237.3 143 90.9
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 9.7e-61 236.9 143 82.5
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 1.3e-60 236.5 143 80.4
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.3e-60 236.5 143 92.3
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 3.7e-60 235.0 143 89.5
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 3.7e-60 235.0 141 85.1
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 4.8e-60 234.6 141 91.5
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 4.8e-60 234.6 143 89.5
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 4.8e-60 234.6 143 81.1
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.1e-59 233.4 143 80.4
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.1e-59 233.4 143 80.4
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 1.4e-59 233.0 143 85.3
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.8e-59 232.6 141 81.6
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 2.4e-59 232.3 141 80.1
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 2.4e-59 232.3 143 89.5
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 4.1e-59 231.5 143 88.8
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 4.1e-59 231.5 143 80.4
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 5.3e-59 231.1 143 78.3
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 5.3e-59 231.1 143 78.3
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 5.3e-59 231.1 141 83.7
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 5.3e-59 231.1 141 89.4
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 7.0e-59 230.7 141 80.9
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 9.1e-59 230.3 143 88.1
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 9.1e-59 230.3 143 88.8
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 1.2e-58 229.9 143 86.0
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.0e-58 229.2 141 90.1
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 2.6e-58 228.8 143 83.2
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 2.6e-58 228.8 141 78.7
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 5.9e-58 227.6 143 80.4
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 5.9e-58 227.6 143 80.4
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 5.9e-58 227.6 141 85.1
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 5.9e-58 227.6 141 86.5
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 7.7e-58 227.3 140 87.9
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 1.0e-57 226.9 141 77.3
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 1.0e-57 226.9 141 87.2
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 1.0e-57 226.9 141 87.2
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-57 226.1 141 87.9
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-57 226.1 141 87.9
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-57 226.1 141 87.9
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 1.7e-57 226.1 143 76.9
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 2.9e-57 225.3 141 86.5
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 5.0e-57 224.6 143 76.9
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 6.5e-57 224.2 141 86.5
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 6.5e-57 224.2 141 77.3
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 3.2e-56 221.9 144 86.1
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 4.2e-56 221.5 143 76.9
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 7.2e-56 220.7 147 76.2
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 9.4e-56 220.3 141 83.7
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 9.4e-56 220.3 144 86.1
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 1.2e-55 219.9 143 76.2
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 1.2e-55 219.9 144 74.3
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.2e-55 219.9 141 83.7
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 3.6e-55 218.4 141 74.5
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.0e-54 216.9 141 80.1
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 1.4e-54 216.5 143 72.7
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.4e-54 216.5 143 72.7
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.4e-54 216.5 143 72.7
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.4e-54 216.5 143 72.7
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.4e-54 216.5 143 72.7
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 1.8e-54 216.1 141 72.3
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 2.3e-54 215.7 143 74.8
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 4.0e-54 214.9 141 79.4
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 5.2e-54 214.5 141 70.9
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 5.2e-54 214.5 141 70.9
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 5.2e-54 214.5 141 70.9
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 8.8e-54 213.8 141 71.6
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 1.2e-53 213.4 141 70.9
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 1.5e-53 213.0 143 72.7
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.5e-53 213.0 141 70.2
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.5e-53 213.0 141 70.2
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.5e-53 213.0 141 70.9
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 2.0e-53 212.6 141 70.9
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 3.3e-53 211.8 141 70.9
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 3.3e-53 211.8 141 70.9
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 4.4e-53 211.5 141 74.5
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 5.7e-53 211.1 141 70.2
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 5.7e-53 211.1 143 70.6
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 5.7e-53 211.1 141 71.6
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 5.7e-53 211.1 141 71.6
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 5.7e-53 211.1 143 71.3
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 7.5e-53 210.7 141 70.2
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 7.5e-53 210.7 141 70.2
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 7.5e-53 210.7 141 71.6
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 1.7e-52 209.5 143 72.0
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.7e-52 209.5 141 68.8
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.7e-52 209.5 141 68.8
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.8e-52 208.0 143 70.6
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 8.2e-52 207.2 141 70.9
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 1.4e-51 206.5 143 72.7
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.1e-51 204.9 143 70.6
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 4.5e-50 201.4 147 79.6
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 1.0e-49 200.3 141 70.9
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.7e-49 199.5 141 66.0
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 5.0e-49 198.0 137 73.7
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 1.9e-48 196.1 123 89.4
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 9.4e-48 193.7 190 53.2
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 3.6e-47 191.8 105 88.6
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 5.2e-46 188.0 117 90.6
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 7.5e-45 184.1 115 90.4
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 6.3e-44 181.0 114 89.5
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.1e-43 180.3 114 89.5
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 1.8e-43 179.5 115 87.0
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.4e-43 179.1 115 74.8
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 5.4e-43 177.9 140 60.7
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 5.4e-43 177.9 105 83.8
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 2.0e-42 176.0 114 86.8
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 2.0e-42 176.0 114 86.8
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 3.5e-42 175.3 140 75.0
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 3.5e-42 175.3 114 79.8
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 3.5e-42 175.3 115 80.9
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 1.3e-41 173.3 138 63.0
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.7e-41 172.9 114 86.8
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 2.9e-41 172.2 140 67.9
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 1.1e-40 170.2 143 60.1
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 9.5e-40 167.2 114 70.2
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 7.5e-37 157.5 115 77.4
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 1.6e-34 149.8 113 69.9
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.7e-34 149.1 119 76.5
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.7e-34 149.1 119 76.5
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 1.7e-33 146.4 81 87.7
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 1.9e-32 142.9 96 70.8
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 7.3e-32 141.0 96 69.8
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 2.1e-31 139.4 96 77.1
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 6.1e-31 137.9 134 68.7
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 1.0e-30 137.1 136 50.0
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 3.4e-29 132.1 76 82.9
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 4.1e-27 125.2 90 64.4
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 8.6e-25 117.5 67 86.6
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 5.6e-24 114.8 84 84.5
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 1.2e-23 113.6 147 44.2
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 4.4e-21 105.1 147 40.1
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 9.8e-21 104.0 143 39.9
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.5e-18 95.5 77 64.9
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 1.0e-17 94.0 86 51.2
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 1.7e-12 76.6 57 63.2
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 3.2e-11 72.4 79 53.2
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 4.3e-08 62.0 45 93.3
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 5.6e-08 61.6 69 50.7
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 9.5e-08 60.8 69 49.3
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 1.2e-07 60.5 34 85.3
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 1.6e-07 60.1 67 49.3
Eucgr.F03519 Eucalyptus grandis HOM05D004024 ORTHO05D004639 2.1e-07 59.7 67 49.3
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 2.1e-07 59.7 67 49.3
PGR083G0593 Punica granatum HOM05D004024 ORTHO05D004639 2.1e-07 59.7 67 49.3
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 3.6e-07 58.9 67 44.8
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 3.6e-07 58.9 29 89.7
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 4.7e-07 58.5 84 42.9
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 4.7e-07 58.5 67 46.3
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 1.1e-06 57.4 29 86.2
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 1.1e-06 57.4 26 96.2
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 1.4e-06 57.0 28 85.7
TWI38G2360 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 2.4e-06 56.2 67 46.3
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 4.0e-06 55.5 66 45.5
TWI39G0215 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 5.2e-06 55.1 67 44.8
unitig_85.g27339 Utricularia gibba HOM05D004024 ORTHO05D004639 6.8e-06 54.7 67 46.3
Medtr2g070300 Medicago truncatula HOM05D004936 ORTHO05D005977 8.9e-06 54.3 26 92.3
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 8.9e-06 54.3 67 44.8
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 8.9e-06 54.3 67 44.8


User provided reference genes

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