Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.2e-222 776.2 400 100.0
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 4.6e-177 624.8 400 83.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 3.3e-175 618.6 400 83.0
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 9.0e-173 610.5 413 78.7
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 1.4e-168 596.7 404 77.7
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 3.4e-164 582.0 400 78.0
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.4e-162 576.6 365 83.3
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.2e-161 573.5 401 76.6
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 7.9e-161 570.9 361 83.1
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.0e-160 568.9 407 75.2
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 5.1e-160 568.2 360 83.3
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 5.1e-160 568.2 401 75.8
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 5.1e-160 568.2 409 76.3
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.3e-158 563.5 364 80.5
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.4e-157 560.1 413 74.3
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.4e-157 560.1 397 74.8
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.8e-157 559.7 386 79.0
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 3.1e-157 558.9 383 77.0
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 9.1e-157 557.4 399 76.7
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 3.5e-156 555.4 398 74.6
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 7.7e-156 554.3 373 78.8
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 7.7e-156 554.3 383 76.5
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 7.7e-156 554.3 400 72.5
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 1.0e-155 553.9 364 77.2
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.7e-155 553.1 360 80.3
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 3.8e-155 552.0 362 79.6
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 5.0e-155 551.6 414 71.3
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 5.0e-155 551.6 406 71.9
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 5.0e-155 551.6 400 74.0
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 5.0e-155 551.6 343 84.3
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 8.5e-155 550.8 360 79.4
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 3.2e-154 548.9 364 76.4
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 7.2e-154 547.7 392 74.7
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.2e-153 547.0 395 73.4
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 1.6e-153 546.6 361 79.5
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 8.0e-153 544.3 360 80.6
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 1.8e-152 543.1 395 72.2
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 1.8e-152 543.1 395 72.2
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 2.3e-152 542.7 359 77.7
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 5.2e-152 541.6 395 72.7
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.2e-152 541.6 402 72.4
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 8.8e-152 540.8 393 74.0
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.1e-151 540.4 378 74.3
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-151 540.4 402 72.1
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-151 540.4 402 72.1
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.5e-151 540.0 402 72.4
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 2.0e-151 539.7 360 78.1
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 2.6e-151 539.3 364 79.9
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 7.5e-151 537.7 379 76.3
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 7.5e-151 537.7 402 72.1
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 2.2e-150 536.2 445 67.4
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.1e-149 533.9 358 78.2
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.1e-149 533.9 346 80.1
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 3.1e-149 532.3 345 80.3
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 4.1e-149 531.9 356 77.8
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 5.3e-149 531.6 371 75.7
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 2.6e-148 529.3 375 74.4
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.0e-147 527.3 383 74.4
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 1.0e-147 527.3 368 76.9
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.0e-147 527.3 317 85.2
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.7e-147 526.6 378 74.1
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 2.9e-147 525.8 400 71.5
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 3.8e-147 525.4 365 77.5
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 5.0e-147 525.0 364 75.8
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 8.5e-147 524.2 360 77.8
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.1e-146 523.9 390 73.3
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.5e-146 523.5 401 72.1
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 1.5e-146 523.5 395 71.4
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 9.4e-146 520.8 378 74.6
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 6.1e-145 518.1 390 73.1
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 6.8e-144 514.6 394 70.3
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 4.4e-143 511.9 391 72.1
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 3.7e-142 508.8 372 73.7
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.2e-140 503.8 373 73.7
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 4.5e-140 501.9 352 75.3
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.3e-139 500.4 347 74.6
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.7e-139 500.0 377 72.4
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 6.5e-139 498.0 368 72.6
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.1e-138 497.3 375 71.5
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.5e-138 496.9 365 73.4
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 4.2e-138 495.4 407 67.6
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 4.7e-137 491.9 296 85.8
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 4.5e-132 475.3 318 75.8
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 5.9e-132 474.9 330 75.2
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 7.7e-132 474.6 344 72.1
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 1.0e-131 474.2 381 68.5
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 2.1e-129 466.5 323 73.4
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.4e-128 463.8 318 74.5
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.8e-128 463.4 328 76.5
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 8.3e-126 454.5 444 60.1
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 1.1e-125 454.1 309 79.9
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 2.7e-124 449.5 319 73.4
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 5.6e-114 415.2 389 60.4
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 5.2e-112 408.7 294 72.4
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 3.0e-107 392.9 387 56.6
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 3.4e-103 379.4 239 81.6
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.9e-85 320.5 421 48.9
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 5.6e-82 308.9 233 71.2
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 1.6e-81 307.4 333 47.1
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.8e-80 303.9 201 75.6
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 9.0e-80 301.6 316 50.0
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.6e-79 300.1 295 63.1
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 2.6e-79 300.1 290 59.0
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 6.0e-76 288.9 282 62.1
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 1.0e-75 288.1 321 47.0
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.9e-74 283.9 907 30.1
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 2.2e-70 270.4 256 54.3
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 6.5e-70 268.9 467 41.8
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.9e-66 257.3 158 84.8
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 5.9e-55 219.2 143 78.3
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 1.0e-51 208.4 157 73.9
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 1.4e-43 181.4 124 76.6
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 3.0e-43 180.3 116 81.0
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 1.5e-37 161.4 177 54.2
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.8e-32 144.4 337 31.8
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 8.3e-25 119.0 82 74.4
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 3.5e-15 87.0 255 29.8
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.7e-14 84.7 46 89.1
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 2.3e-14 84.3 81 60.5
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 8.6e-14 82.4 48 83.3
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 1.6e-12 78.2 49 75.5
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 5.7e-10 69.7 305 25.6
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 9.8e-10 68.9 74 58.1
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 2.7e-07 60.8 66 47.0
arahy.Tifrunner.gnm1.ann1.63F50L Arachis hypogaea HOM05D000300 ORTHO05D000383 6.6e-06 56.2 50 62.0


User provided reference genes

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