Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.0e-223 777.3 430 100.0
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.9e-131 473.4 433 67.2
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.6e-95 354.0 434 51.6
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.7e-92 344.0 435 51.3
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 4.0e-86 322.8 433 54.7
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.2e-82 311.2 445 51.2
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 4.6e-82 309.3 441 49.2
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 6.1e-82 308.9 421 54.6
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 5.7e-80 302.4 440 51.8
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.2e-79 300.4 454 48.7
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.0e-68 265.0 432 43.1
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 3.2e-67 260.0 426 41.3
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.2e-66 258.1 437 41.0
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.7e-66 256.9 440 45.5
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.8e-65 254.2 440 45.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.9e-65 253.1 440 45.0
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 5.1e-65 252.7 428 42.3
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 5.1e-65 252.7 385 46.0
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 3.3e-64 250.0 437 42.1
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.7e-63 246.5 448 43.5
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.4e-62 244.6 467 47.3
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.8e-62 244.2 385 45.2
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.8e-62 244.2 385 45.2
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 8.5e-60 235.3 413 41.2
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.5e-59 234.6 383 42.8
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.5e-59 234.6 456 39.7
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 7.2e-59 232.3 455 44.2
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 6.7e-57 225.7 246 54.1
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.0e-56 224.2 428 43.9
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 2.6e-56 223.8 479 37.4
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.8e-54 217.6 384 43.0
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 2.4e-54 217.2 450 44.0
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 5.3e-54 216.1 426 46.0
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.2e-53 214.9 507 38.1
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 3.5e-53 213.4 464 45.0
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.1e-51 208.4 453 38.2
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 3.2e-51 206.8 247 51.4
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.2e-50 204.9 454 41.2
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.2e-50 204.9 434 43.1
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.7e-50 203.8 383 41.5
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.4e-48 196.8 361 39.3
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.3e-47 194.9 244 50.0
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.3e-47 194.9 334 48.8
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 2.2e-47 194.1 596 33.4
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.4e-46 190.7 598 33.1
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 3.1e-46 190.3 436 37.4
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.4e-46 189.5 597 32.5
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 7.0e-46 189.1 597 32.7
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.2e-45 188.3 427 40.0
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.7e-45 187.2 390 37.9
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 5.9e-45 186.0 442 37.1
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.2e-44 184.1 597 32.3
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.5e-43 181.4 444 41.9
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.2e-43 179.9 348 39.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.2e-43 179.9 374 39.0
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.5e-43 179.5 377 37.9
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 9.4e-43 178.7 151 64.2
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 4.7e-42 176.4 376 38.8
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.2e-40 171.8 423 40.9
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.6e-40 170.6 433 33.5
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 4.4e-40 169.9 444 35.1
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 9.8e-40 168.7 444 35.1
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.4e-38 164.9 150 60.7
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.8e-38 164.5 139 63.3
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 1.2e-37 161.8 438 34.7
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.0e-37 161.0 438 34.7
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.0e-37 161.0 438 34.7
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.0e-37 161.0 445 35.1
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.5e-37 159.8 425 39.3
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.5e-37 159.8 425 39.3
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.0e-36 158.7 349 37.2
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 1.3e-36 158.3 255 44.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.7e-36 157.9 171 53.2
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-36 157.9 122 64.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 5.5e-35 152.9 436 38.1
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 7.2e-35 152.5 345 39.4
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 2.1e-34 151.0 119 63.9
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 2.1e-34 151.0 251 40.6
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.1e-34 151.0 274 39.4
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 2.8e-34 150.6 442 36.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.7e-34 149.8 449 39.4
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.0e-33 148.7 432 36.8
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 1.4e-33 148.3 175 49.7
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 4.0e-33 146.7 344 34.0
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 5.2e-33 146.4 275 40.4
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.2e-32 145.2 138 55.8
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.2e-32 145.2 326 33.7
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.5e-32 144.8 169 52.1
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.0e-32 144.4 381 34.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.6e-32 144.1 398 34.9
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 2.2e-31 141.0 449 35.0
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.9e-31 140.6 401 30.9
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.8e-30 137.9 430 37.2
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.1e-30 136.7 135 57.0
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.6e-29 134.8 390 34.4
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 3.5e-29 133.7 410 32.9
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 5.9e-29 132.9 387 32.6
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 7.8e-29 132.5 136 55.1
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.0e-28 132.1 146 48.6
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-28 131.3 148 48.0
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.9e-28 130.6 123 59.3
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 3.9e-28 130.2 256 39.8
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.9e-27 127.9 143 49.0
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.5e-27 127.5 387 31.8
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 5.6e-27 126.3 270 37.4
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.6e-27 126.3 124 55.6
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 7.3e-27 125.9 140 50.7
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 9.5e-27 125.6 151 50.3
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.6e-26 124.8 355 33.2
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 3.6e-26 123.6 137 50.4
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.6e-26 123.6 122 55.7
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.0e-25 122.1 120 55.8
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.0e-24 117.9 146 47.9
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 4.4e-24 116.7 134 50.0
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.4e-24 116.7 215 39.1
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 9.8e-24 115.5 149 45.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 3.7e-23 113.6 118 54.2
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.9e-23 113.2 141 48.2
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.1e-22 112.1 123 52.0
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 3.2e-22 110.5 186 40.3
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.4e-22 109.8 122 50.8
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 4.6e-21 106.7 141 46.1
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.1e-17 95.5 64 73.4
Duzib133G1381 Durio zibethinus HOM05D005417 ORTHO05D002591 8.9e-17 92.4 319 40.1
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 8.9e-17 92.4 123 48.8
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 1.4e-14 85.1 184 37.5
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 5.4e-14 83.2 112 43.8
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 2.1e-13 81.3 76 60.5
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 3.3e-11 73.9 151 33.8
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.6e-11 73.2 238 31.5
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 5.6e-11 73.2 272 27.6
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.6e-10 71.6 127 37.8
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.7e-10 70.1 126 38.9
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 1.5e-08 65.1 214 27.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.5e-08 65.1 151 34.4
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 4.9e-07 60.1 49 65.3
SEGI_26671 Sequoiadendron giganteum HOM05D038370 ORTHO05D037583 4.9e-07 60.1 92 41.3
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 1.4e-06 58.5 147 34.7


User provided reference genes

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