Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 0.0e+00 1096.3 550 100.0
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 4.0e-280 967.6 549 88.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.7e-270 935.6 556 83.8
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 3.9e-267 924.5 553 84.1
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.5e-266 922.5 554 82.7
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.3e-265 919.5 515 87.4
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 3.6e-265 917.9 553 84.1
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.8e-264 915.6 550 82.5
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 5.3e-264 914.1 554 81.6
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 6.9e-264 913.7 551 82.2
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 4.5e-263 911.0 549 83.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 7.6e-263 910.2 554 81.6
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 9.9e-263 909.8 554 83.0
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.3e-262 909.4 550 82.2
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.7e-262 909.1 554 81.6
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 2.2e-262 908.7 553 83.0
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.9e-262 907.5 551 82.9
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.6e-260 901.0 514 87.0
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 3.3e-258 894.8 564 79.4
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 9.6e-258 893.3 564 79.1
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.3e-257 892.9 512 86.1
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.1e-257 892.1 512 86.1
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.8e-256 889.0 512 85.9
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.5e-255 885.9 562 78.6
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.6e-255 885.2 512 85.5
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.4e-255 884.8 517 85.3
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.5e-255 884.4 512 85.5
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 7.6e-255 883.6 554 80.7
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.7e-254 882.5 554 80.0
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 6.4e-254 880.6 554 78.5
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 8.4e-254 880.2 549 79.4
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 8.4e-254 880.2 553 79.9
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.1e-253 879.8 559 80.0
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.4e-253 879.4 559 80.0
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.2e-253 877.9 557 79.9
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 7.1e-253 877.1 539 81.1
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.2e-252 876.3 516 83.1
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 3.5e-252 874.8 549 79.1
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 7.9e-252 873.6 549 79.1
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.3e-250 868.2 560 78.4
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 4.3e-250 867.8 516 82.2
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.3e-249 866.3 538 79.9
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-249 866.3 549 78.0
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.4e-248 862.8 549 78.0
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 5.3e-248 860.9 550 78.4
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 7.6e-247 857.1 524 79.8
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.3e-246 856.3 549 77.6
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 2.9e-246 855.1 557 77.2
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.9e-246 854.4 550 77.8
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 4.9e-246 854.4 559 76.7
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 6.5e-246 854.0 516 80.8
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 4.2e-245 851.3 526 79.5
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 4.2e-245 851.3 550 77.3
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 9.3e-245 850.1 538 77.9
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 5.1e-243 844.3 559 76.0
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 6.7e-243 844.0 507 82.1
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.7e-243 844.0 537 78.4
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.1e-242 843.2 516 80.2
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 2.1e-241 839.0 550 76.0
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 2.8e-241 838.6 549 76.5
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-240 836.3 549 76.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.4e-240 835.5 554 76.5
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.2e-239 833.2 533 78.2
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 7.6e-239 830.5 560 74.1
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.9e-237 825.9 515 79.8
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-236 822.8 549 74.5
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.3e-235 819.7 515 79.4
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.8e-235 819.3 519 78.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.9e-235 818.1 516 80.8
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.5e-234 815.5 524 76.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.3e-234 814.7 545 74.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 9.7e-234 813.5 528 76.7
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 9.7e-234 813.5 551 73.7
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 1.6e-233 812.8 551 74.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 8.2e-233 810.4 519 77.3
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.1e-232 810.1 563 72.6
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.0e-231 805.8 550 73.3
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 4.5e-231 804.7 549 72.9
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 4.5e-231 804.7 519 76.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 4.5e-231 804.7 546 73.6
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 5.9e-231 804.3 546 74.0
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 7.7e-231 803.9 542 74.4
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 2.2e-230 802.4 548 74.6
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.8e-230 801.6 469 80.6
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.4e-229 799.7 578 70.4
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.1e-228 795.8 521 78.5
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 2.7e-228 795.4 546 73.1
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 7.9e-228 793.9 560 70.5
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.4e-227 793.1 549 73.0
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 3.9e-227 791.6 639 65.4
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.3e-225 786.6 548 73.5
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.7e-225 786.2 487 79.9
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.2e-225 785.8 546 73.1
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.3e-225 784.3 546 73.3
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 2.4e-224 782.3 546 73.4
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 5.3e-224 781.2 514 75.5
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 9.1e-224 780.4 538 71.9
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.2e-223 780.0 550 72.0
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.5e-223 779.6 544 71.7
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 4.5e-223 778.1 550 71.6
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.0e-222 776.9 550 71.6
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.7e-222 776.2 528 73.7
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.4e-221 773.1 549 71.4
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 5.5e-221 771.2 559 69.9
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 9.4e-221 770.4 534 74.0
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 9.4e-221 770.4 523 73.0
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.1e-220 769.2 559 70.3
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.1e-220 769.2 462 80.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.0e-219 766.9 570 68.1
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 3.9e-219 765.0 549 70.5
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 9.7e-218 760.4 545 69.4
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 9.7e-218 760.4 545 69.4
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.1e-216 755.0 560 70.4
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-214 749.6 406 87.4
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 8.0e-212 740.7 545 70.3
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.3e-206 723.4 563 67.3
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 2.7e-204 715.7 551 69.9
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 8.0e-204 714.1 543 67.6
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.1e-200 703.7 507 70.2
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.6e-194 682.6 402 79.6
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 4.1e-192 675.2 558 62.0
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.1e-189 667.2 563 62.5
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 3.7e-177 625.5 501 64.1
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.9e-177 625.2 549 62.1
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.7e-174 616.7 553 59.7
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.3e-174 616.3 521 61.8
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 3.4e-170 602.4 435 72.9
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 9.2e-168 594.3 503 61.8
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 7.8e-159 564.7 549 55.9
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-158 563.9 373 77.7
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 5.1e-158 562.0 554 55.2
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 2.5e-157 559.7 429 69.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.4e-152 542.0 354 76.6
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 7.9e-143 511.5 480 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.0e-139 499.2 563 49.6
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 2.6e-138 496.5 375 68.0
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.6e-135 485.7 542 49.1
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 8.7e-134 481.5 546 49.8
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.6e-130 468.4 389 65.0
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.3e-108 397.9 306 62.1
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.3e-102 377.1 503 44.5
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 7.0e-99 365.5 410 54.6
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 7.7e-98 362.1 619 38.9
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 2.3e-70 270.8 165 84.2
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 9.2e-67 258.8 247 57.5
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.2e-58 231.9 459 32.2
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.7e-58 230.7 226 57.1
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 7.8e-50 202.6 417 33.1
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 3.9e-49 200.3 373 37.5
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.6e-47 194.9 468 31.2
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.8e-46 191.4 149 73.2
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 5.2e-46 189.9 91 96.7
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.2e-45 188.7 164 72.6
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.5e-45 188.3 111 82.9
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 2.2e-44 184.5 98 84.7
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 7.1e-43 179.5 155 60.6
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.8e-42 176.0 118 72.0
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 1.0e-41 175.6 164 54.3
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 3.9e-41 173.7 439 30.5
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.8e-23 114.4 86 59.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 5.3e-22 110.2 164 40.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.1e-15 88.2 40 100.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.4e-13 80.9 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 5.8e-13 80.1 45 80.0
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.3e-09 68.9 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 2.3e-09 68.2 33 84.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 6.7e-09 66.6 109 41.3
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 2.2e-07 61.6 56 53.6


User provided reference genes

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