Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 9.9e-53 211.1 249 100.0
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.6e-42 175.6 253 91.3
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 6.7e-41 171.8 255 84.3
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.8e-39 166.4 242 86.0
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.8e-39 165.6 253 88.5
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 2.6e-37 159.8 247 85.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 7.6e-37 158.3 247 85.4
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 7.6e-37 158.3 246 83.7
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.3e-36 157.5 241 86.3
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.3e-36 157.5 241 86.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.2e-36 156.8 247 84.6
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 3.8e-36 156.0 247 84.6
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.5e-36 155.2 245 85.7
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 8.5e-36 154.8 249 82.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 8.5e-36 154.8 253 83.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.1e-35 154.5 245 82.4
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.2e-35 152.5 252 80.2
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 2.1e-34 150.2 242 86.4
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.7e-34 149.8 245 86.9
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 4.6e-34 149.1 259 80.7
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 7.9e-34 148.3 248 82.3
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 7.9e-34 148.3 242 83.9
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 7.9e-34 148.3 261 80.5
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.4e-33 147.5 234 84.2
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.4e-33 147.5 243 86.8
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 3.9e-33 146.0 247 82.6
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 4.3e-32 142.5 240 86.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 7.4e-32 141.7 236 86.4
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 9.7e-32 141.4 248 85.1
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.2e-31 140.2 240 80.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.8e-31 139.0 241 82.6
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 1.8e-30 137.1 250 80.4
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.8e-30 137.1 248 79.4
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.1e-30 136.3 258 80.6
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.1e-30 136.3 262 76.3
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 4.1e-30 136.0 252 79.8
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 4.1e-30 136.0 244 81.6
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 6.9e-30 135.2 241 80.5
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 6.9e-30 135.2 247 71.7
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 6.9e-30 135.2 252 79.4
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.2e-29 134.4 262 67.9
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.5e-29 134.0 261 76.2
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 3.4e-29 132.9 236 87.3
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.0e-28 131.3 259 76.1
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.2e-28 130.2 236 86.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 2.9e-28 129.8 247 78.5
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.9e-28 129.8 242 83.9
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 5.0e-28 129.0 249 83.9
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 5.0e-28 129.0 235 87.2
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 5.0e-28 129.0 260 83.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-26 124.4 266 79.7
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.6e-26 124.0 234 85.5
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-26 123.6 247 83.8
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 2.7e-26 123.2 250 82.4
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 2.7e-26 123.2 246 78.9
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.6e-26 122.9 246 82.5
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 3.6e-26 122.9 247 78.5
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 4.7e-26 122.5 248 78.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.1e-26 122.1 265 80.0
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.0e-25 121.3 267 79.4
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 3.0e-25 119.8 251 74.5
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.9e-25 119.4 248 82.7
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.7e-23 112.8 234 73.5
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 4.8e-23 112.5 253 52.6
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 6.3e-23 112.1 253 74.7
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.4e-22 110.9 237 81.4
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 5.3e-22 109.0 217 83.9
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 9.1e-22 108.2 262 78.2
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.4e-21 106.3 229 83.4
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 5.9e-21 105.5 241 56.4
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-20 103.6 250 75.6
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.9e-19 100.5 115 88.7
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.2e-18 97.8 261 70.9
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.6e-18 97.4 215 85.1
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.1e-18 97.1 254 79.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.6e-18 96.3 137 86.9
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.6e-18 96.3 137 86.9
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.6e-18 96.3 137 86.9
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.7e-18 95.9 244 73.4
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 6.1e-18 95.5 242 77.3
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 3.0e-17 93.2 51 80.4
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 5.2e-17 92.4 235 79.6
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 8.8e-17 91.7 138 86.2
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.3e-16 89.7 246 79.7
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.3e-16 89.7 263 62.0
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 4.4e-16 89.4 50 80.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 5.7e-16 89.0 241 80.1
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 2.2e-15 87.0 55 76.4
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 4.8e-15 85.9 207 87.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 8.2e-15 85.1 179 85.5
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-14 84.7 56 76.8
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.4e-14 84.3 237 77.2
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 3.1e-14 83.2 55 67.3
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.3e-14 82.4 50 72.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.3e-14 82.4 63 63.5
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.0e-13 80.5 245 75.9
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 3.5e-13 79.7 66 66.7
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.5e-13 79.7 259 69.1
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 4.5e-13 79.3 67 65.7
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 4.5e-13 79.3 236 72.9
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.0e-12 78.2 71 62.0
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.2e-12 77.0 63 65.1
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.2e-12 77.0 57 66.7
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 5.0e-12 75.9 52 67.3
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 5.0e-12 75.9 52 67.3
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 6.5e-12 75.5 49 67.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 6.5e-12 75.5 49 67.3
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.5e-11 74.3 44 75.0
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.9e-11 73.9 50 66.0
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.2e-11 73.2 51 66.7
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 5.5e-11 72.4 47 72.3
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 5.5e-11 72.4 51 64.7
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 9.4e-11 71.6 61 65.6
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.6e-10 70.9 51 64.7
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 1.6e-10 70.9 47 70.2
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.6e-10 70.9 51 62.7
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 3.6e-10 69.7 52 63.5
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 4.7e-10 69.3 48 70.8
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 1.4e-09 67.8 61 57.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.4e-09 67.8 58 62.1
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 1.4e-09 67.8 58 62.1
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 2.3e-09 67.0 70 58.6
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.3e-09 67.0 59 62.7
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 4.0e-09 66.2 39 82.1
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 5.2e-09 65.9 56 62.5
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 8.8e-09 65.1 52 63.5
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.8e-09 65.1 59 61.0
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 8.8e-09 65.1 56 60.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-08 64.7 58 55.2
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.2e-08 64.7 134 76.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.5e-08 64.3 57 57.9
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.5e-08 64.3 54 59.3
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.0e-08 63.9 56 58.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-08 62.8 59 64.4
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.4e-08 62.8 59 59.3
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.7e-08 62.4 56 57.1
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 9.7e-08 61.6 56 57.1
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.7e-07 60.8 93 39.8
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.2e-07 60.5 59 57.6
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 2.8e-07 60.1 212 81.6
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.8e-07 60.1 59 61.0
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 3.7e-07 59.7 56 55.4
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 4.8e-07 59.3 59 57.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 4.8e-07 59.3 59 57.6
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.8e-07 59.3 59 54.2
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 8.2e-07 58.5 109 89.9
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.4e-06 57.8 43 62.8
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 1.8e-06 57.4 55 56.4
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 2.4e-06 57.0 58 58.6
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.0 58 58.6
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.0 58 58.6
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-06 57.0 58 58.6
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.4e-06 57.0 59 54.2
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 3.1e-06 56.6 42 61.9
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.3e-06 55.8 106 90.6
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 7.0e-06 55.5 54 59.3
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 7.0e-06 55.5 59 49.2
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 7.0e-06 55.5 63 55.6
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.1e-06 55.1 58 56.9


User provided reference genes

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