Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 0.0e+00 1229.2 675 100.0
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 1.0e-213 747.3 709 60.9
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.7e-147 527.3 725 48.0
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 3.3e-143 513.1 621 53.1
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 8.2e-142 508.4 638 51.6
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.6e-140 503.4 767 45.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 4.2e-138 496.1 638 50.9
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 1.6e-137 494.2 799 43.6
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 4.6e-137 492.7 715 47.6
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.5e-135 487.6 619 51.9
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 3.7e-134 483.0 695 51.2
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 6.3e-134 482.3 721 45.8
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 4.5e-132 476.1 768 42.8
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 5.9e-132 475.7 733 47.1
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 6.1e-129 465.7 803 42.2
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 7.4e-127 458.8 794 41.8
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.8e-125 454.1 737 45.3
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 4.1e-125 453.0 714 47.3
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 9.1e-125 451.8 751 42.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.5e-124 451.1 740 44.6
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.5e-124 451.1 756 42.9
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 8.5e-123 445.3 737 44.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.2e-122 443.4 724 42.8
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.6e-121 441.0 753 43.7
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.6e-116 424.5 750 40.7
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 5.9e-116 422.5 737 42.9
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.2e-111 408.3 789 39.5
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.5e-111 405.6 785 39.7
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.7e-110 404.4 789 39.7
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.4e-109 401.4 745 40.7
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 5.3e-109 399.4 731 41.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.7e-108 397.1 702 40.9
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 2.5e-106 390.6 712 40.0
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 2.3e-104 384.0 712 40.4
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.3e-102 378.3 752 39.2
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.8e-102 377.1 713 40.7
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 8.3e-102 375.6 689 39.6
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.4e-101 374.8 711 39.7
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.2e-100 371.7 659 41.6
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.6e-97 360.1 732 39.8
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 8.0e-97 359.0 642 43.6
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 8.8e-96 355.5 407 56.5
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.5e-95 354.8 751 39.4
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 1.7e-94 351.3 861 35.3
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.8e-93 347.8 657 40.8
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 5.9e-92 342.8 717 38.4
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.7e-91 341.3 292 68.5
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 3.8e-91 340.1 716 38.0
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 7.3e-90 335.9 705 38.9
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 2.8e-89 334.0 761 36.8
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.0e-88 332.0 694 37.5
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.4e-88 331.6 660 37.9
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.2e-87 328.6 667 38.2
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.7e-87 326.2 685 37.7
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.9e-86 323.2 800 36.0
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.4e-85 319.7 792 35.2
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.4e-85 319.7 800 35.0
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 5.6e-82 309.7 751 35.6
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.2e-81 308.5 737 37.4
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 2.3e-80 304.3 707 35.2
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 2.4e-77 294.3 734 37.1
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 7.0e-77 292.7 705 37.9
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 7.0e-77 292.7 734 37.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.2e-76 292.0 629 38.8
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 6.0e-76 289.7 506 43.9
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 3.9e-75 287.0 707 36.5
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.6e-75 286.2 649 37.8
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 8.6e-75 285.8 711 37.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 4.3e-74 283.5 731 37.1
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 9.5e-74 282.3 743 35.7
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 9.5e-74 282.3 731 35.8
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.1e-72 278.9 377 46.4
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.3e-72 277.7 707 36.4
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.5e-71 275.0 717 34.9
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 5.4e-69 266.5 705 35.7
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.6e-68 265.0 705 35.0
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.1e-67 260.0 725 34.6
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 5.1e-67 260.0 636 34.9
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.5e-66 258.5 714 33.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 8.1e-65 252.7 633 35.9
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 8.9e-64 249.2 740 32.2
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 5.8e-63 246.5 571 36.4
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 1.3e-62 245.4 697 33.0
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 9.2e-61 239.2 688 33.6
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.1e-60 238.0 691 33.9
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.1e-60 238.0 691 33.9
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 2.7e-60 237.7 619 36.5
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 4.6e-60 236.9 685 32.8
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 4.6e-60 236.9 648 34.6
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 3.9e-59 233.8 707 32.0
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.9e-58 231.5 590 34.1
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 4.3e-58 230.3 707 33.0
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.1e-56 225.7 700 31.4
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 5.2e-56 223.4 716 33.7
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 1.5e-55 221.9 706 30.9
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 2.6e-55 221.1 640 33.8
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 2.6e-55 221.1 662 33.7
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 4.9e-54 216.9 551 35.0
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 4.9e-54 216.9 720 31.7
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 4.9e-54 216.9 545 35.6
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 9.3e-53 212.6 703 31.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.2e-52 212.2 738 29.9
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.7e-52 211.1 704 31.5
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 3.5e-52 210.7 693 31.2
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 6.0e-52 209.9 687 31.1
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 7.8e-52 209.5 701 31.2
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.0e-51 209.1 636 34.4
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 5.1e-51 206.8 549 35.0
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 3.6e-49 200.7 556 34.5
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 6.2e-49 199.9 518 34.7
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 9.0e-48 196.1 521 34.5
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 8.7e-43 179.5 347 42.1
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 7.9e-36 156.4 614 31.3
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.5e-31 140.6 612 28.9
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 2.9e-30 137.9 642 28.5
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.9e-26 125.2 287 37.6
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 3.3e-26 124.4 442 31.2
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.2e-25 121.7 613 28.2
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.4e-24 118.2 535 28.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.2e-23 115.9 352 34.1
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 2.1e-20 105.1 635 25.5
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.8e-19 102.1 208 40.9
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 2.3e-19 101.7 292 33.6
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 3.9e-19 100.9 292 33.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 8.2e-17 93.2 157 43.9
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.1e-13 82.8 376 27.9
Pp3c5_26610 Physcomitrium patens HOM05D031130 ORTHO05D019295 1.7e-06 58.9 78 44.9
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 2.9e-06 58.2 291 29.6
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 2.9e-06 58.2 150 38.7


User provided reference genes

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