Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 3.2e-306 1054.3 535 100.0
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 1.9e-258 895.6 534 83.7
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 2.7e-257 891.7 533 82.9
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 6.7e-256 887.1 535 82.1
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 1.9e-255 885.6 538 82.0
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 4.3e-255 884.4 534 84.5
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 2.8e-254 881.7 534 81.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 1.4e-253 879.4 535 81.7
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 2.4e-253 878.6 538 81.8
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 6.9e-253 877.1 534 82.2
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.7e-251 872.5 532 81.0
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 2.9e-251 871.7 531 82.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 6.5e-251 870.5 534 81.1
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 8.5e-251 870.2 534 80.5
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.1e-250 869.8 534 80.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 4.6e-249 864.4 534 80.9
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 6.7e-248 860.5 535 81.7
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 8.8e-248 860.1 534 81.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.1e-247 859.8 534 80.3
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 1.1e-247 859.8 534 80.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 1.1e-247 859.8 533 80.9
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.1e-245 853.2 534 79.8
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.3e-245 850.9 534 79.6
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 2.0e-244 849.0 534 79.8
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 2.0e-244 849.0 549 78.0
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 3.4e-244 848.2 534 78.5
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 4.5e-244 847.8 534 78.8
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.0e-243 846.7 534 78.8
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.8e-243 844.7 534 78.7
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 5.0e-243 844.3 534 78.1
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 1.4e-242 842.8 534 78.7
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.4e-242 842.8 533 79.0
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.9e-242 842.4 532 78.2
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 3.2e-242 841.6 534 77.5
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 9.4e-242 840.1 532 77.3
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 1.2e-241 839.7 534 80.1
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 6.1e-241 837.4 534 79.2
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 7.9e-241 837.0 534 79.0
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 5.2e-240 834.3 534 78.8
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 6.7e-240 833.9 534 78.1
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 2.6e-239 832.0 536 76.7
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 3.3e-239 831.6 533 77.3
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 4.4e-239 831.2 534 78.3
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 4.4e-239 831.2 534 78.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 5.7e-239 830.9 534 78.7
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 8.2e-238 827.0 532 77.3
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.1e-237 825.1 530 76.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 3.1e-237 825.1 535 78.3
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 7.0e-237 823.9 535 78.1
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.2e-236 823.2 535 78.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 2.6e-236 822.0 532 76.7
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 9.4e-234 813.5 532 77.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 2.7e-233 812.0 532 75.8
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 2.7e-233 812.0 546 75.1
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 4.0e-232 808.1 533 75.6
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 1.2e-231 806.6 536 75.4
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 2.0e-231 805.8 536 75.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 5.7e-231 804.3 534 75.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 9.7e-231 803.5 531 76.1
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 9.7e-231 803.5 533 74.1
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 1.3e-230 803.1 532 76.3
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 4.8e-230 801.2 530 76.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 6.3e-230 800.8 534 75.5
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 8.2e-230 800.4 534 78.1
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 8.2e-230 800.4 535 74.4
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.1e-229 800.0 604 69.0
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.1e-229 800.0 568 72.5
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.4e-229 799.7 531 75.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 1.8e-229 799.3 533 74.9
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.8e-229 799.3 535 74.8
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 2.4e-229 798.9 529 74.7
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 3.1e-229 798.5 539 75.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 3.1e-229 798.5 529 74.7
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.2e-228 796.6 607 68.0
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 1.6e-228 796.2 535 75.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.7e-227 792.7 534 74.2
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 6.5e-227 790.8 535 73.3
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.1e-226 790.0 534 74.5
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.9e-226 789.3 535 73.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.5e-226 788.9 533 73.9
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.2e-226 788.1 535 73.6
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 5.5e-226 787.7 535 73.1
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 9.4e-226 786.9 616 67.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.1e-225 785.8 535 74.0
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 3.6e-225 785.0 532 75.0
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 4.7e-225 784.6 535 73.5
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 8.0e-225 783.9 535 73.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 8.0e-225 783.9 535 73.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.0e-224 783.5 535 74.4
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.8e-224 782.7 530 73.8
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 2.3e-224 782.3 522 74.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 7.5e-223 777.3 534 72.1
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.4e-221 772.3 535 72.7
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.2e-220 770.0 535 73.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 1.2e-220 770.0 538 72.7
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 7.7e-220 767.3 564 69.0
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.0e-219 766.9 535 72.7
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.0e-219 766.9 535 72.7
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.9e-219 765.4 536 72.6
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 2.9e-219 765.4 535 72.5
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 3.8e-219 765.0 545 71.0
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 6.5e-219 764.2 535 72.3
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 8.5e-219 763.8 535 72.3
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.5e-218 763.1 535 72.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.5e-218 763.1 535 72.5
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 7.2e-218 760.8 534 71.5
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 6.8e-216 754.2 535 72.1
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.7e-214 748.4 493 75.7
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.4e-213 745.7 493 75.5
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.4e-213 744.6 565 67.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.0e-212 742.7 519 71.5
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.5e-212 741.9 539 70.5
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 7.3e-194 681.0 527 65.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 4.0e-192 675.2 531 64.8
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.7e-190 669.8 396 83.3
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 5.4e-181 638.3 425 76.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.4e-176 622.9 534 59.4
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 3.4e-175 619.0 477 68.1
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.9e-158 562.0 531 53.5
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 6.7e-155 551.6 394 70.8
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.7e-155 551.2 529 54.1
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.2e-153 544.7 533 53.8
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.3e-139 500.0 443 62.5
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 6.5e-134 481.9 355 69.9
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.5e-130 470.7 354 68.6
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-125 454.5 269 81.0
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.5e-125 453.4 340 69.7
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 2.2e-118 430.3 342 65.2
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.5e-117 426.8 365 64.4
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.7e-116 423.3 276 77.2
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.1e-112 411.4 571 44.8
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.8e-110 402.9 528 45.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 2.4e-104 383.6 249 77.1
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.6e-94 349.0 270 65.9
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 9.5e-93 345.1 262 64.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.0e-78 298.5 181 81.2
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.6e-76 291.2 497 38.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.6e-71 274.6 168 79.8
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 8.1e-68 262.3 185 69.2
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 8.7e-62 242.3 158 79.1
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.8e-59 234.6 158 72.8
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 8.4e-57 225.7 172 63.4
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 4.5e-50 203.4 131 75.6
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 6.7e-46 189.5 132 73.5
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 5.6e-45 186.4 491 31.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 4.2e-40 170.2 107 73.8
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.2e-40 170.2 102 78.4
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.5e-40 169.9 110 73.6
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.3e-38 164.5 104 73.1
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 6.7e-38 162.9 100 79.0
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 6.7e-38 162.9 107 72.9
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-37 162.2 260 44.6
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.3e-30 138.7 128 60.2
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 5.1e-30 136.7 72 93.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 8.7e-30 136.0 135 60.0
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 6.1e-23 113.2 77 79.2
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.2e-08 63.9 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 4.2e-08 63.9 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 4.2e-08 63.9 35 80.0


User provided reference genes

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