Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 7.3e-53 210.3 107 100.0
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 2.2e-33 145.6 109 73.4
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 1.1e-32 143.3 109 72.5
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 1.9e-32 142.5 109 70.6
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 3.2e-32 141.7 99 73.7
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.2e-31 139.8 105 66.7
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 7.8e-31 137.1 107 68.2
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.7e-30 136.0 107 67.3
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 2.3e-30 135.6 99 68.7
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 5.1e-30 134.4 107 65.4
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 5.1e-30 134.4 108 65.7
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 6.6e-30 134.0 99 69.7
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 8.7e-30 133.7 100 67.0
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 2.5e-29 132.1 108 65.7
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 4.3e-29 131.3 108 63.9
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 2.1e-28 129.0 99 65.7
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.1e-28 129.0 97 66.0
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 2.8e-28 128.6 108 65.7
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 3.6e-28 128.3 108 63.0
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 6.2e-28 127.5 102 62.7
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 6.2e-28 127.5 99 66.7
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.1e-27 126.7 98 66.3
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 1.8e-27 125.9 108 63.9
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.8e-27 125.9 101 69.3
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 2.4e-27 125.6 108 62.0
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 6.9e-27 124.0 105 62.9
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 9.0e-27 123.6 101 64.4
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.5e-26 122.9 91 67.0
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.6e-26 122.1 109 61.5
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.6e-26 122.1 108 63.0
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 3.4e-26 121.7 108 61.1
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 7.6e-26 120.6 103 64.1
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 7.6e-26 120.6 98 63.3
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 9.9e-26 120.2 108 59.3
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 9.9e-26 120.2 108 59.3
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 1.7e-25 119.4 110 60.9
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.7e-25 119.4 109 58.7
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.2e-25 119.0 104 57.7
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 2.9e-25 118.6 115 59.1
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 2.9e-25 118.6 95 64.2
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 2.9e-25 118.6 103 61.2
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 3.8e-25 118.2 109 56.9
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 4.9e-25 117.9 109 58.7
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 4.9e-25 117.9 127 55.1
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 4.9e-25 117.9 97 60.8
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 6.4e-25 117.5 107 60.7
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 8.4e-25 117.1 104 62.5
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 8.4e-25 117.1 104 60.6
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 1.4e-24 116.3 118 55.1
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 1.4e-24 116.3 106 59.4
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 1.9e-24 115.9 105 59.0
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 2.4e-24 115.5 98 65.3
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 2.4e-24 115.5 108 57.4
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 2.4e-24 115.5 108 57.4
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 2.4e-24 115.5 97 62.9
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 3.2e-24 115.2 99 61.6
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 3.2e-24 115.2 99 61.6
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 3.2e-24 115.2 99 62.6
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 4.2e-24 114.8 105 59.0
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.4e-24 114.4 118 55.9
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 5.4e-24 114.4 106 58.5
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 7.1e-24 114.0 99 59.6
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 1.2e-23 113.2 90 65.6
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.6e-23 112.8 107 60.7
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 1.6e-23 112.8 103 56.3
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 2.1e-23 112.5 107 60.7
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 2.1e-23 112.5 72 75.0
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.7e-23 112.1 114 55.3
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 6.0e-23 110.9 95 61.1
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.0e-23 110.9 79 74.7
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 6.0e-23 110.9 107 57.9
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 7.9e-23 110.5 95 63.2
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 1.3e-22 109.8 104 57.7
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 1.8e-22 109.4 109 54.1
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 2.3e-22 109.0 103 58.3
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 3.9e-22 108.2 97 56.7
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 6.7e-22 107.5 125 52.0
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 6.7e-22 107.5 102 59.8
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 8.7e-22 107.1 105 58.1
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 8.7e-22 107.1 125 51.2
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.5e-21 106.3 98 57.1
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 2.5e-21 105.5 104 53.8
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.5e-21 105.5 78 70.5
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 3.3e-21 105.1 98 56.1
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 4.3e-21 104.8 105 58.1
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 9.6e-21 103.6 73 71.2
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 9.6e-21 103.6 104 54.8
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.6e-20 102.8 103 57.3
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.6e-20 102.8 103 57.3
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 2.1e-20 102.4 106 52.8
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 2.8e-20 102.1 102 53.9
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 2.8e-20 102.1 109 56.0
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.8e-20 102.1 102 53.9
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 3.7e-20 101.7 99 54.5
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 6.2e-20 100.9 81 61.7
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 1.1e-19 100.1 111 52.3
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 1.4e-19 99.8 109 52.3
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 1.4e-19 99.8 69 68.1
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 2.4e-19 99.0 108 54.6
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 4.0e-19 98.2 99 52.5
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 4.0e-19 98.2 93 57.0
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 5.3e-19 97.8 72 63.9
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 6.9e-19 97.4 82 57.3
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.2e-18 96.7 103 54.4
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.5e-18 96.3 104 49.0
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 1.5e-18 96.3 100 52.0
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 2.0e-18 95.9 104 49.0
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 2.0e-18 95.9 104 49.0
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 3.4e-18 95.1 109 49.5
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 5.8e-18 94.4 109 48.6
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 7.6e-18 94.0 100 52.0
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 7.6e-18 94.0 100 52.0
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 7.6e-18 94.0 100 52.0
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 9.9e-18 93.6 105 49.5
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 1.3e-17 93.2 102 50.0
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 1.7e-17 92.8 101 50.5
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.7e-17 92.8 91 53.8
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 4.9e-17 91.3 73 60.3
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 8.4e-17 90.5 97 51.5
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 1.1e-16 90.1 78 59.0
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 4.6e-15 84.7 59 67.8
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 8.7e-14 80.5 70 48.6
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 1.6e-12 76.3 60 58.3
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 4.8e-12 74.7 80 45.0
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.8e-11 72.8 50 74.0
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 7.6e-10 67.4 69 43.5
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 6.5e-09 64.3 66 45.5
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 2.5e-08 62.4 45 71.1


User provided reference genes

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