Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.1e-246 856.3 464 100.0
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 2.2e-170 602.8 444 79.3
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 2.8e-165 585.9 459 76.0
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 2.5e-134 483.0 448 66.3
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-133 480.7 448 66.1
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 8.1e-133 478.0 448 65.8
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.4e-116 424.1 447 58.6
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 2.2e-114 416.8 395 61.0
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.5e-112 409.5 491 53.0
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 3.0e-111 406.4 417 59.0
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.6e-107 393.3 503 52.5
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 1.6e-104 384.0 469 52.0
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.7e-104 383.3 493 51.9
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-103 380.9 512 51.4
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.0e-103 379.8 490 52.4
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 3.7e-101 372.9 455 53.8
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 5.3e-100 369.0 409 57.7
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.3e-100 369.0 512 50.0
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 2.0e-99 367.1 484 49.8
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 3.8e-98 362.8 494 49.4
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 2.8e-93 346.7 437 52.4
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 9.1e-92 341.7 452 49.8
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 6.1e-88 328.9 458 48.5
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 8.0e-88 328.6 422 51.2
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.8e-85 320.1 422 50.5
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 5.5e-81 305.8 422 49.1
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.0e-78 297.4 491 42.0
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.4e-78 296.6 521 40.7
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 4.8e-77 292.7 408 49.5
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 2.1e-72 277.3 349 50.7
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 1.8e-68 264.2 404 49.3
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 2.8e-64 250.4 468 40.8
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.0e-63 248.4 451 44.6
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.6e-59 234.6 456 41.4
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 2.0e-59 234.2 463 41.9
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 2.3e-58 230.7 357 44.8
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 5.0e-58 229.6 389 44.2
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 6.6e-58 229.2 311 48.9
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 5.6e-57 226.1 446 40.1
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 7.3e-57 225.7 316 45.6
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.6e-56 223.4 345 45.2
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.4e-55 221.5 353 43.9
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 5.2e-55 219.5 316 44.3
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 2.0e-54 217.6 484 38.8
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 2.6e-54 217.2 319 44.2
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 2.2e-53 214.2 366 42.1
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 9.2e-52 208.8 442 40.7
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 9.2e-52 208.8 314 44.6
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 2.0e-51 207.6 329 43.5
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 3.5e-51 206.8 333 42.3
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 6.0e-51 206.1 338 43.2
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.3e-50 204.1 310 45.5
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 3.0e-50 203.8 411 41.8
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.0e-50 203.8 231 51.1
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 6.6e-50 202.6 451 37.5
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.1e-49 201.8 411 40.6
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.9e-49 201.1 397 39.8
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 5.6e-49 199.5 318 42.1
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.8e-48 197.2 439 37.6
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 6.2e-48 196.1 469 37.7
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 1.4e-47 194.9 460 38.5
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.5e-46 191.4 457 34.4
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 2.0e-46 191.0 293 45.1
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.6e-46 190.7 324 39.5
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 2.2e-45 187.6 367 38.4
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.2e-44 183.7 329 41.3
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 2.7e-43 180.6 410 35.4
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 7.8e-43 179.1 347 40.1
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 8.6e-42 175.6 317 41.0
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 4.3e-41 173.3 325 38.8
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 2.1e-40 171.0 356 37.9
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 4.0e-39 166.8 363 36.6
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 4.0e-39 166.8 327 37.9
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 4.0e-39 166.8 447 36.9
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.2e-38 165.2 180 51.1
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 4.4e-38 163.3 312 41.7
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 7.6e-38 162.5 287 40.4
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.3e-37 161.8 342 37.4
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.7e-37 161.4 269 39.4
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.4e-36 157.5 360 36.1
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 3.2e-36 157.1 223 43.0
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 1.0e-34 152.1 394 35.3
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 4.7e-32 143.3 332 32.5
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 8.1e-32 142.5 331 34.7
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 8.1e-32 142.5 439 35.3
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 4.0e-31 140.2 208 38.9
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 2.0e-30 137.9 323 34.4
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.4e-30 137.1 309 36.9
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 4.4e-30 136.7 339 33.9
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 1.6e-27 128.3 288 35.1
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.3e-26 125.2 211 39.8
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 2.3e-26 124.4 284 35.6
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 3.0e-26 124.0 337 33.2
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 7.3e-25 119.4 212 39.6
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 3.6e-24 117.1 317 33.4
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 3.6e-24 117.1 211 37.9
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 8.1e-24 115.9 212 39.2
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 8.1e-24 115.9 212 39.2
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.1e-23 115.5 234 34.6
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.1e-23 114.0 322 33.2
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.1e-23 114.0 317 33.1
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 5.3e-23 113.2 360 30.8
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 6.9e-23 112.8 348 31.3
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.6e-22 109.4 316 32.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 1.7e-21 108.2 187 41.7
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.1e-19 101.3 373 31.9
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 2.3e-18 97.8 85 52.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 3.0e-18 97.4 79 57.0
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 5.6e-17 93.2 259 32.0
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.8e-16 90.9 356 28.4
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 6.2e-16 89.7 375 31.5
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 5.8e-14 83.2 101 43.6
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 7.6e-14 82.8 146 43.8
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 6.4e-13 79.7 445 28.1
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 3.2e-12 77.4 110 39.1
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 2.1e-11 74.7 332 23.2
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.7e-11 74.3 187 27.8
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.0e-10 70.9 187 30.5
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 6.7e-10 69.7 186 26.3
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 5.6e-09 66.6 198 29.8
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 9.6e-09 65.9 187 26.7
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 9.6e-09 65.9 190 27.4
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 9.6e-09 65.9 198 26.3
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.3e-08 65.5 251 28.7
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.3e-08 65.5 212 27.4
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.3e-08 65.5 195 28.7
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 2.1e-08 64.7 188 26.6
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.8e-08 63.5 188 26.6
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 6.2e-08 63.2 188 27.7
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 6.2e-08 63.2 186 24.7
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 1.1e-07 62.4 191 29.3
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.1e-07 62.4 213 24.4
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 1.4e-07 62.0 187 27.3
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 1.4e-07 62.0 195 27.2
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.4e-07 62.0 187 28.3
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.4e-07 62.0 183 26.2
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.4e-07 61.2 192 27.6
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 3.1e-07 60.8 192 26.6
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 3.1e-07 60.8 187 26.7
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 3.1e-07 60.8 238 23.9
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 3.1e-07 60.8 186 25.8
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 4.0e-07 60.5 191 27.2
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 6.9e-07 59.7 189 27.0
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 6.9e-07 59.7 183 29.5
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 6.9e-07 59.7 188 27.7
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 2.0e-06 58.2 187 26.7
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.0e-06 58.2 187 25.1
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 2.0e-06 58.2 187 28.9
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 2.6e-06 57.8 227 26.9
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 2.6e-06 57.8 187 26.2
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 2.6e-06 57.8 187 25.7
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 2.6e-06 57.8 188 26.1
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 3.4e-06 57.4 209 28.7
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 3.4e-06 57.4 187 27.8
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 4.5e-06 57.0 189 27.0
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 4.5e-06 57.0 252 22.6
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 4.5e-06 57.0 187 27.8
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 5.8e-06 56.6 188 26.1
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 5.8e-06 56.6 187 24.6
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 7.6e-06 56.2 191 27.2
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 7.6e-06 56.2 191 23.6
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.0e-05 55.8 192 28.1
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.0e-05 55.8 187 27.3
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.0e-05 55.8 185 27.6
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 1.0e-05 55.8 188 23.9


User provided reference genes

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