Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 7.3e-178 627.1 314 100.0
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 7.9e-164 580.5 314 91.4
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.4e-160 569.7 314 89.2
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.2e-159 566.6 314 88.9
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 4.5e-159 564.7 315 88.9
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.5e-158 560.8 315 89.5
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 8.4e-158 560.5 315 87.6
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 8.4e-158 560.5 315 88.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.4e-157 559.7 315 89.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.9e-157 559.3 315 87.6
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 2.5e-157 558.9 315 87.6
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.5e-157 558.9 315 85.7
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.2e-157 558.5 315 88.6
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.2e-157 558.1 315 88.9
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 5.5e-157 557.8 315 86.7
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.6e-156 556.2 315 87.6
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.6e-156 556.2 314 85.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.6e-156 556.2 315 87.0
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.1e-156 555.8 315 85.7
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.7e-156 555.4 315 86.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 87.6
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 6.0e-156 554.3 315 85.7
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.0e-155 553.5 315 86.3
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.8e-155 552.7 315 85.4
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.0e-155 552.0 315 86.3
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 3.0e-155 552.0 315 86.3
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 6.7e-155 550.8 314 86.3
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 8.7e-155 550.4 316 86.4
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.1e-154 550.1 315 86.0
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.9e-154 549.3 330 83.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.3e-154 548.1 315 85.4
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 5.7e-154 547.7 315 85.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 9.6e-154 547.0 316 84.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.1e-153 545.8 313 85.6
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 6.2e-153 544.3 312 84.3
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 6.2e-153 544.3 315 85.4
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 8.2e-153 543.9 315 84.4
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.1e-152 543.5 315 84.8
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.1e-152 543.5 314 84.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.1e-152 543.5 315 85.4
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.4e-152 543.1 314 83.4
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.8e-152 542.7 314 83.8
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 6.9e-152 540.8 315 83.8
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 9.0e-152 540.4 314 82.8
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 9.0e-152 540.4 313 83.7
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 1.2e-151 540.0 315 83.5
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.2e-151 540.0 314 85.4
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.2e-151 540.0 314 83.4
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.0e-151 539.3 315 84.4
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 2.6e-151 538.9 314 84.7
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 2.6e-151 538.9 315 84.1
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 3.4e-151 538.5 315 84.1
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 3.4e-151 538.5 317 84.2
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 4.5e-151 538.1 314 84.7
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 4.5e-151 538.1 315 83.5
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 5.8e-151 537.7 314 84.4
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 7.6e-151 537.3 315 83.8
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 7.6e-151 537.3 315 84.8
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 7.6e-151 537.3 315 83.8
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.0e-150 537.0 314 84.4
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.0e-150 537.0 317 85.5
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 1.3e-150 536.6 317 83.9
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 2.2e-150 535.8 314 82.2
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.2e-150 535.8 314 84.1
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.0e-150 534.6 311 83.6
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 6.5e-150 534.3 314 81.8
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 6.5e-150 534.3 315 83.8
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 6.5e-150 534.3 314 84.4
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 8.4e-150 533.9 338 79.6
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.1e-149 533.5 316 83.2
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.1e-149 533.5 315 82.9
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.4e-149 533.1 314 81.8
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.4e-149 533.1 313 82.4
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-149 532.7 312 83.0
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.5e-149 532.3 315 84.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.2e-149 531.9 314 83.1
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 7.1e-149 530.8 314 84.7
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 7.1e-149 530.8 315 83.2
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 1.2e-148 530.0 315 83.5
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.6e-148 529.6 315 83.2
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 2.1e-148 529.3 321 82.6
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 2.7e-148 528.9 315 81.0
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 4.6e-148 528.1 317 83.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.6e-148 528.1 317 83.6
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.1e-148 527.7 317 83.6
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.0e-147 526.9 317 83.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.3e-147 526.6 317 83.3
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.3e-147 526.6 317 83.3
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.8e-147 526.2 317 83.3
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.8e-147 526.2 313 82.4
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.3e-147 525.8 314 80.9
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.9e-146 522.7 315 80.6
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.3e-146 521.9 309 83.8
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 4.3e-146 521.5 314 79.9
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.7e-146 521.2 315 82.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 7.4e-146 520.8 319 80.3
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 9.7e-146 520.4 313 80.8
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 3.7e-145 518.5 314 82.2
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 6.3e-145 517.7 313 80.5
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 6.3e-145 517.7 306 83.3
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 6.3e-145 517.7 315 79.7
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.2e-145 517.3 339 77.0
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-144 516.9 309 82.5
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.1e-144 516.9 321 80.1
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 9.0e-144 513.8 461 61.4
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 5.0e-142 508.1 315 81.0
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 6.5e-142 507.7 383 70.5
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 7.2e-141 504.2 309 81.6
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 3.6e-140 501.9 316 79.1
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.8e-139 499.6 315 78.7
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 3.7e-137 491.9 310 78.1
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 8.2e-137 490.7 294 79.3
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.4e-136 489.2 320 75.3
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 3.1e-136 488.8 314 78.0
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.5e-135 486.5 316 77.5
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 4.5e-135 485.0 285 82.5
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.7e-134 483.0 313 77.0
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.9e-134 482.3 313 77.6
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 5.0e-134 481.5 312 76.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.9e-133 479.6 312 76.9
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.7e-132 474.9 326 74.2
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 6.1e-132 474.6 288 80.9
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 7.9e-132 474.2 315 77.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.4e-131 473.4 283 80.9
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 5.1e-131 471.5 309 75.1
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 4.4e-130 468.4 282 81.6
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 8.0e-124 447.6 313 72.8
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.4e-122 441.8 318 70.8
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 1.7e-121 439.9 312 68.9
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.5e-117 426.8 261 79.7
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.5e-117 426.0 240 86.2
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.4e-115 420.2 285 71.6
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 3.0e-115 419.1 313 68.1
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 4.6e-95 352.1 213 78.4
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 2.6e-82 309.7 254 61.4
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 3.7e-81 305.8 191 78.5
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.6e-76 290.4 171 83.6
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.3e-75 286.6 171 81.3
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 9.9e-74 281.2 314 49.4
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 9.9e-74 281.2 314 49.7
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 3.3e-69 266.2 167 78.4
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 5.6e-69 265.4 273 52.7
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.1e-64 251.1 151 79.5
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.1e-64 251.1 151 79.5
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.3e-61 239.6 188 60.1
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 2.4e-59 233.4 299 42.8
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 4.4e-58 229.2 186 64.5
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.8e-57 226.1 307 41.4
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.4e-56 224.2 276 48.2
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 3.5e-55 219.5 112 91.1
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.1e-52 210.3 184 59.8
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.9e-45 187.2 303 43.2
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.6e-45 185.7 149 65.8
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.3e-44 184.5 103 85.4
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 2.1e-44 183.7 113 77.0
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 8.1e-44 181.8 113 76.1
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 8.1e-44 181.8 113 76.1
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.1e-43 181.4 124 71.0
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.0e-43 179.5 142 64.8
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.0e-42 177.2 135 65.2
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.5e-40 170.2 179 53.6
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.3e-38 164.5 168 53.6
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 2.1e-36 157.1 276 34.4
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.6e-31 141.0 116 63.8
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-29 134.8 108 63.0
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.2e-25 120.6 68 80.9
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-25 119.8 113 57.5
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 6.1e-23 112.5 80 71.2
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 6.1e-23 112.5 80 71.2
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 6.7e-22 109.0 60 85.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 4.3e-21 106.3 72 66.7
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 5.3e-19 99.4 117 43.6
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 9.1e-19 98.6 53 86.8
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.4e-16 91.3 88 58.0
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 3.2e-16 90.1 62 72.6
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.2e-15 88.2 52 80.8
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 6.1e-15 85.9 53 75.5
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 6.7e-14 82.4 100 51.0
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 8.2e-12 75.5 43 79.1
Atru.chr2.3021 Acer truncatum HOM05D003935 ORTHO05D052568 4.0e-06 56.6 51 58.8
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 8.8e-06 55.5 67 44.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 8.8e-06 55.5 67 44.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 8.8e-06 55.5 67 44.8


User provided reference genes

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