Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G022900 Carya illinoinensis HOM05D001221 ORTHO05D009285 1.6e-37 159.5 115 100.0
CiPaw.09G207400 Carya illinoinensis HOM05D001221 ORTHO05D009285 2.9e-15 85.5 49 85.7
Potri.016G112900 Populus trichocarpa HOM05D001221 ORTHO05D009285 1.4e-14 83.2 49 81.6
Cfa010721 Carpinus fangiana HOM05D001221 ORTHO05D009285 2.5e-14 82.4 49 83.7
Haze_03252 Corylus avellana HOM05D001221 ORTHO05D009285 2.5e-14 82.4 49 83.7
TPR.G23659 Trifolium pratense HOM05D001221 ORTHO05D009285 4.2e-14 81.6 50 78.0
Lj2C77T2 Lonicera japonica HOM05D001221 ORTHO05D009285 5.5e-14 81.3 49 83.7
CSS0000018 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D009285 7.2e-14 80.9 49 83.7
CSS0034566 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D009285 7.2e-14 80.9 49 83.7
TWI60G0701 Tripterygium wilfordii HOM05D001221 ORTHO05D009285 1.2e-13 80.1 49 81.6
Dinv37071 Davidia involucrata HOM05D001221 ORTHO05D009285 1.6e-13 79.7 49 81.6
Nn2g14026 Nelumbo nucifera HOM05D001221 ORTHO05D009285 1.6e-13 79.7 48 81.2
Atru.chr8.2211 Acer truncatum HOM05D001221 ORTHO05D009285 2.7e-13 79.0 49 79.6
ECA247G4014 Erigeron canadensis HOM05D001221 ORTHO05D009285 2.7e-13 79.0 49 83.7
Actinidia29122 Actinidia chinensis HOM05D001221 ORTHO05D009285 3.6e-13 78.6 49 79.6
Medtr7g088170 Medicago truncatula HOM05D001221 ORTHO05D009285 3.6e-13 78.6 50 74.0
SGA_v2.0_scaffold85G26754 Striga asiatica HOM05D001221 ORTHO05D009285 3.6e-13 78.6 49 79.6
Oeu030516.1 Olea europaea HOM05D001221 ORTHO05D009285 4.6e-13 78.2 49 79.6
Cpa.g.sc106.33 Carica papaya HOM05D001221 ORTHO05D009285 6.1e-13 77.8 61 68.9
Ciclev10011651m.g Citrus clementina HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
Lsat_1_v5_gn_9_35920 Lactuca sativa HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 79.6
Lalb_Chr07g0193891 Lupinus albus HOM05D001221 ORTHO05D009285 6.1e-13 77.8 50 76.0
Nitab4.5_0000008g0890 Nicotiana tabacum HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
Nitab4.5_0011703g0010 Nicotiana tabacum HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
Prupe.6G272700 Prunus persica HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
Sopen09g007240 Solanum pennellii HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
PGSC0003DMG400008495 Solanum tuberosum HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
TWI34G0521 Tripterygium wilfordii HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 77.6
GSVIVG01033992001 Vitis vinifera HOM05D001221 ORTHO05D009285 6.1e-13 77.8 49 75.5
Actinidia13771 Actinidia chinensis HOM05D001221 ORTHO05D009285 7.9e-13 77.4 49 79.6
FAN14G5805 Fragaria x ananassa HOM05D001221 ORTHO05D009285 7.9e-13 77.4 49 77.6
Gohir.A06G173400 Gossypium hirsutum HOM05D001221 ORTHO05D009285 7.9e-13 77.4 51 78.4
Gohir.D06G183400 Gossypium hirsutum HOM05D001221 ORTHO05D009285 7.9e-13 77.4 51 78.4
Gorai.010G214400 Gossypium raimondii HOM05D001221 ORTHO05D009285 7.9e-13 77.4 51 78.4
TAR369G0855 Trochodendron aralioides HOM05D001221 ORTHO05D009285 7.9e-13 77.4 49 79.6
MSTRG.19022 Avicennia marina HOM05D001221 ORTHO05D009285 1.0e-12 77.0 49 75.5
FAN02G1926 Fragaria x ananassa HOM05D001221 ORTHO05D009285 1.0e-12 77.0 49 77.6
FAN05G4573 Fragaria x ananassa HOM05D001221 ORTHO05D009285 1.0e-12 77.0 49 77.6
Phvul.002G155200 Phaseolus vulgaris HOM05D001221 ORTHO05D009285 1.0e-12 77.0 50 72.0
VMungo1215G0061 Vigna mungo HOM05D001221 ORTHO05D009285 1.0e-12 77.0 50 72.0
ClCG04G007050 Citrullus lanatus HOM05D001221 ORTHO05D009285 1.4e-12 76.6 49 73.5
DCAR_028823 Daucus carota HOM05D001221 ORTHO05D009285 1.4e-12 76.6 49 79.6
Manes.09G103400 Manihot esculenta HOM05D001221 ORTHO05D009285 1.4e-12 76.6 49 77.6
COL.COLO4_02741 Corchorus olitorius HOM05D001221 ORTHO05D009285 1.8e-12 76.3 57 70.2
Migut.J00190 Erythranthe guttata HOM05D001221 ORTHO05D009285 1.8e-12 76.3 49 79.6
Nitab4.5_0003567g0110 Nicotiana tabacum HOM05D001221 ORTHO05D009285 1.8e-12 76.3 49 77.6
CAN.G703.5 Capsicum annuum HOM05D001221 ORTHO05D009285 2.3e-12 75.9 49 75.5
Cc00_g18170 Coffea canephora HOM05D001221 ORTHO05D009285 2.3e-12 75.9 49 77.6
Cc00_g18180 Coffea canephora HOM05D001221 ORTHO05D009285 2.3e-12 75.9 49 77.6
MD04G1148400 Malus domestica HOM05D001221 ORTHO05D009285 2.3e-12 75.9 48 77.1
RcHm_v2.0_Chr3g0463601 Rosa chinensis HOM05D001221 ORTHO05D009285 2.3e-12 75.9 49 75.5
Ca_08338_v3 Cicer arietinum L. HOM05D001221 ORTHO05D009285 3.0e-12 75.5 50 70.0
FvH4_6g11860 Fragaria vesca HOM05D001221 ORTHO05D009285 3.0e-12 75.5 49 75.5
Psat3g083200 Pisum sativum HOM05D001221 ORTHO05D009285 3.0e-12 75.5 50 74.0
Thecc.10G136500 Theobroma cacao HOM05D001221 ORTHO05D009285 3.0e-12 75.5 51 76.5
Sabra16G0108600 Salix brachista HOM05D001221 ORTHO05D009285 3.9e-12 75.1 49 75.5
Glyma.08G119100 Glycine max HOM05D001221 ORTHO05D009285 6.7e-12 74.3 50 70.0
Lj3g0014679 Lotus japonicus HOM05D001221 ORTHO05D009285 6.7e-12 74.3 50 72.0
SHI12823 Sapria himalayana HOM05D001221 ORTHO05D009285 1.5e-11 73.2 49 71.4
FAN14G4172 Fragaria x ananassa HOM05D001221 ORTHO05D009285 2.0e-11 72.8 49 73.5
Sed0009696 Sechium edule HOM05D001221 ORTHO05D009285 2.0e-11 72.8 49 71.4
MELO3C003302.2 Cucumis melo HOM05D001221 ORTHO05D009285 3.3e-11 72.0 49 69.4
CsaV3_4G026220 Cucumis sativus L. HOM05D001221 ORTHO05D009285 3.3e-11 72.0 49 69.4
MD12G1162000 Malus domestica HOM05D001221 ORTHO05D009285 3.3e-11 72.0 49 73.5
PSO384G2279 Papaver somniferum HOM05D001221 ORTHO05D009285 4.3e-11 71.6 49 69.4
PGR042G0922 Punica granatum HOM05D001221 ORTHO05D009285 5.7e-11 71.2 50 76.0
unitig_27.g24844 Utricularia gibba HOM05D001221 ORTHO05D009285 5.7e-11 71.2 49 71.4
Aqoxy2G03089 Aquilegia oxysepala HOM05D001221 ORTHO05D009285 7.4e-11 70.9 59 59.3
BcaC05g29636 Brassica carinata HOM05D001221 ORTHO05D009285 4.1e-09 65.1 50 68.0
Rhsim05G0207300 Rhododendron simsii HOM05D001221 ORTHO05D009285 5.3e-09 64.7 51 68.6
HPP92_012633 Vanilla planifolia HOM05D001221 ORTHO05D009285 5.3e-09 64.7 50 66.0
Sp3g07450 Schrenkiella parvula HOM05D001221 ORTHO05D009285 6.9e-09 64.3 50 68.0
Aa31LG3G1560 Aethionema arabicum HOM05D001221 ORTHO05D009285 1.2e-08 63.5 50 66.0
A05p39830 Brassica napus HOM05D001221 ORTHO05D009285 1.2e-08 63.5 51 66.7
BraA05t22767Z Brassica rapa HOM05D001221 ORTHO05D009285 1.2e-08 63.5 51 66.7
ATR0618G243 Amborella trichopoda HOM05D001221 ORTHO05D009285 1.5e-08 63.2 49 65.3
THA.LOC104816213 Tarenaya hassleriana HOM05D001221 ORTHO05D009285 1.5e-08 63.2 50 64.0
C05p58870 Brassica napus HOM05D001221 ORTHO05D009285 2.0e-08 62.8 50 64.0
BolC5t34539H Brassica oleracea HOM05D001221 ORTHO05D009285 2.0e-08 62.8 50 64.0
Thhalv10020689m.g Eutrema salsugineum HOM05D001221 ORTHO05D009285 3.4e-08 62.0 50 64.0
CARHR083370 Cardamine hirsuta HOM05D001221 ORTHO05D009285 7.7e-08 60.8 50 62.0
AL3G20060 Arabidopsis lyrata HOM05D001221 ORTHO05D009285 2.2e-07 59.3 50 62.0
AT3G09030 Arabidopsis thaliana HOM05D001221 ORTHO05D009285 2.2e-07 59.3 50 62.0
Carub.0003s0816 Capsella rubella HOM05D001221 ORTHO05D009285 2.2e-07 59.3 50 62.0
CDE04G2724 Ceratophyllum demersum HOM05D001986 ORTHO05D009285 2.9e-07 58.9 44 65.9
PGR042G0854 Punica granatum HOM05D001221 ORTHO05D006671 6.5e-07 57.8 49 57.1
THA.LOC104809381 Tarenaya hassleriana HOM05D001221 ORTHO05D006671 6.5e-07 57.8 48 56.2
AL7G48110 Arabidopsis lyrata HOM05D001221 ORTHO05D006671 1.9e-06 56.2 48 56.2
AT5G41330 Arabidopsis thaliana HOM05D001221 ORTHO05D006671 1.9e-06 56.2 48 56.2
Haze_08799 Corylus avellana HOM05D001221 ORTHO05D006671 1.9e-06 56.2 43 55.8
Thhalv10027773m.g Eutrema salsugineum HOM05D001221 ORTHO05D006671 1.9e-06 56.2 51 52.9
TAR375G0548 Trochodendron aralioides HOM05D001221 ORTHO05D006671 1.9e-06 56.2 49 55.1
Lj8P219T29 Lonicera japonica HOM05D001221 ORTHO05D006671 2.5e-06 55.8 68 41.2
CARHR212990 Cardamine hirsuta HOM05D001221 ORTHO05D006671 3.2e-06 55.5 48 56.2
Nn6g33391 Nelumbo nucifera HOM05D001221 ORTHO05D006671 3.2e-06 55.5 49 55.1
Cfa012211 Carpinus fangiana HOM05D001221 ORTHO05D006671 4.2e-06 55.1 43 53.5
Lsat_1_v5_gn_3_6400 Lactuca sativa HOM05D001221 ORTHO05D006671 4.2e-06 55.1 59 42.4
ClCG01G002590 Citrullus lanatus HOM05D001221 ORTHO05D006671 5.5e-06 54.7 54 50.0
Dinv37627 Davidia involucrata HOM05D001221 ORTHO05D006671 5.5e-06 54.7 46 54.3
TAR374G1287 Trochodendron aralioides HOM05D001221 ORTHO05D006671 5.5e-06 54.7 49 51.0
Dinv38928 Davidia involucrata HOM05D001221 ORTHO05D006671 7.2e-06 54.3 46 52.2
PGR031G0524 Punica granatum HOM05D001221 ORTHO05D006671 7.2e-06 54.3 46 52.2
Aqoxy7G00283 Aquilegia oxysepala HOM05D001221 ORTHO05D006671 9.4e-06 53.9 63 42.9
DCAR_008375 Daucus carota HOM05D001221 ORTHO05D006671 9.4e-06 53.9 46 54.3
HanXRQChr17g0533191 Helianthus annuus HOM05D001221 ORTHO05D006671 9.4e-06 53.9 62 40.3
Lalb_Chr16g0390061 Lupinus albus HOM05D001221 ORTHO05D006671 9.4e-06 53.9 48 54.2
Oeu011041.1 Olea europaea HOM05D001221 ORTHO05D006671 9.4e-06 53.9 49 55.1
PSO478G1078 Papaver somniferum HOM05D001221 ORTHO05D006671 9.4e-06 53.9 46 56.5
PSO782G4433 Papaver somniferum HOM05D001221 ORTHO05D006671 9.4e-06 53.9 46 56.5
Peaxi162Scf00119g00136 Petunia axillaris HOM05D001221 ORTHO05D006671 9.4e-06 53.9 43 55.8
Solyc08g008070.1 Solanum lycopersicum HOM05D001221 ORTHO05D006671 9.4e-06 53.9 43 58.1
PGSC0003DMG400005822 Solanum tuberosum HOM05D001221 ORTHO05D006671 9.4e-06 53.9 43 58.1
VMungo0251G3060 Vigna mungo HOM05D001221 ORTHO05D006671 9.4e-06 53.9 46 56.5


User provided reference genes

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