Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 3.4e-201 704.9 389 100.0
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 9.2e-138 494.2 312 82.4
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 6.6e-136 488.0 328 78.0
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.8e-133 479.9 334 74.9
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.8e-133 479.9 406 68.0
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 6.8e-133 478.0 332 72.6
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 8.9e-133 477.6 393 73.0
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 1.5e-132 476.9 332 72.6
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 4.4e-132 475.3 390 67.9
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 7.5e-132 474.6 334 72.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.3e-131 473.8 334 73.7
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.9e-131 472.6 342 73.1
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 6.4e-131 471.5 329 74.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 4.1e-130 468.8 421 67.7
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.7e-129 466.1 334 73.4
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.0e-128 464.2 319 74.0
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.3e-128 463.8 391 66.2
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 2.3e-128 463.0 337 72.1
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.1e-127 460.7 388 66.8
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 9.5e-127 457.6 322 73.0
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.6e-126 456.8 325 72.3
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.1e-126 456.4 316 73.4
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 4.7e-126 455.3 406 67.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 2.3e-125 453.0 328 72.3
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 6.8e-125 451.4 319 73.4
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.2e-124 450.7 332 71.1
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.6e-124 449.5 328 71.6
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 3.4e-124 449.1 407 66.1
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.2e-123 446.4 359 66.9
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.4e-123 444.9 377 69.2
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.4e-122 443.7 330 68.2
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.4e-122 443.0 328 69.8
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 7.1e-122 441.4 412 64.6
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.6e-121 440.3 407 63.1
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 4.6e-121 438.7 374 63.6
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 7.8e-121 438.0 333 68.8
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-120 437.2 407 63.1
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 2.3e-120 436.4 386 63.2
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.1e-119 434.1 335 66.9
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.5e-119 433.7 390 65.4
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.5e-119 433.7 390 66.9
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.9e-119 433.3 334 66.8
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 7.3e-119 431.4 330 67.0
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 7.3e-119 431.4 411 59.4
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.1e-118 429.9 328 68.6
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 2.1e-118 429.9 328 69.2
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 2.8e-118 429.5 351 64.7
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 8.1e-118 427.9 402 63.9
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 8.1e-118 427.9 326 68.1
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.8e-117 426.8 389 63.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.4e-117 426.4 335 66.9
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 8.9e-117 424.5 388 59.5
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.5e-116 423.7 330 67.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 2.0e-116 423.3 328 68.9
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 3.4e-116 422.5 324 68.5
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 5.8e-116 421.8 328 67.4
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.3e-115 420.6 331 66.2
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.7e-115 420.2 392 64.8
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 2.2e-115 419.9 337 63.2
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.9e-115 418.7 413 61.5
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 6.4e-115 418.3 418 61.0
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 8.4e-115 417.9 331 67.1
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 3.2e-114 416.0 327 67.6
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 4.2e-114 415.6 328 67.7
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 4.2e-114 415.6 401 61.6
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 7.1e-114 414.8 330 65.8
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 7.1e-114 414.8 327 68.2
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.2e-113 414.1 332 65.1
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 1.2e-113 414.1 329 66.9
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.6e-113 413.7 332 65.1
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 2.1e-113 413.3 328 67.1
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 2.7e-113 412.9 327 66.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.5e-113 412.5 327 66.1
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.7e-112 410.2 325 65.8
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.7e-112 410.2 378 60.1
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 3.0e-112 409.5 327 66.7
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 5.1e-112 408.7 323 67.2
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 8.7e-112 407.9 331 64.7
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 2.5e-111 406.4 325 65.2
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 2.5e-111 406.4 325 65.2
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 4.3e-111 405.6 337 63.8
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.1e-109 401.0 355 60.6
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 1.4e-109 400.6 309 66.3
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 4.0e-109 399.1 317 65.3
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 2.0e-108 396.7 343 62.4
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 2.6e-108 396.4 345 62.6
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.7e-107 393.7 519 51.4
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.4e-106 390.6 332 63.6
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.4e-106 390.6 301 66.4
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 3.2e-106 389.4 342 60.2
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 4.2e-106 389.0 331 63.4
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 5.4e-106 388.7 294 69.0
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-105 387.5 286 68.9
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.6e-105 387.1 325 61.2
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 3.5e-105 386.0 331 62.8
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 3.5e-105 386.0 360 59.7
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 7.8e-105 384.8 320 64.4
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 2.3e-104 383.3 338 61.2
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 6.6e-104 381.7 343 60.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 6.6e-104 381.7 293 67.6
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.5e-103 380.6 314 64.6
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 7.3e-103 378.3 286 68.5
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 9.0e-101 371.3 289 67.1
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.0e-96 357.8 311 62.1
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 1.0e-96 357.8 327 59.3
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 6.2e-94 348.6 299 61.5
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 2.2e-91 340.1 298 58.7
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.0e-88 331.3 338 52.7
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.0e-88 329.7 312 58.7
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.3e-86 324.3 305 58.7
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.8e-80 303.9 290 59.0
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.7e-75 287.3 225 66.7
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.4e-69 267.7 215 64.7
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 2.4e-69 266.9 215 67.9
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 6.1e-65 252.3 333 42.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 7.2e-58 228.8 331 41.1
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.8e-56 224.2 312 46.8
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 3.1e-53 213.4 224 64.7
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.5e-51 205.3 229 61.6
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 7.5e-47 192.2 139 70.5
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 5.4e-45 186.0 228 58.8
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 8.5e-43 178.7 176 59.1
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.9e-42 177.6 382 33.2
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 3.6e-41 173.3 214 50.5
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 3.4e-39 166.8 361 32.1
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.3e-38 164.9 111 75.7
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.1e-37 160.2 156 57.1
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 9.1e-37 158.7 116 68.1
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.2e-36 158.3 260 36.9
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 3.0e-27 127.1 99 65.7
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 3.6e-25 120.2 165 41.8
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.0e-24 116.7 81 74.1
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 4.0e-24 116.7 69 82.6
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.8e-24 115.9 73 76.7
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 2.9e-22 110.5 176 41.5
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.4e-22 109.4 179 44.7
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 5.4e-21 106.3 62 83.9
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 3.0e-19 100.5 65 78.5
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 8.6e-19 99.0 71 70.4
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 2.5e-18 97.4 89 59.6
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-18 97.4 68 77.9
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 1.6e-17 94.7 134 45.5
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 6.2e-17 92.8 65 70.8
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 3.1e-16 90.5 59 72.9
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 3.1e-16 90.5 112 49.1
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 6.8e-16 89.4 159 36.5
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.0e-15 87.8 86 57.0
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 3.4e-15 87.0 343 25.7
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.2e-13 79.0 89 53.9
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.2e-09 68.6 415 25.3
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.8e-08 64.7 113 31.9
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.3e-08 64.3 110 41.8
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 4.9e-06 56.6 33 81.8
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 6.4e-06 56.2 60 50.0


User provided reference genes

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