Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.3e-128 460.3 211 100.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.7e-109 397.1 207 87.4
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.8e-94 349.7 233 72.5
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.3e-76 290.4 200 67.5
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-73 280.8 213 63.4
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.1e-72 277.3 151 82.1
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.2e-72 274.6 219 64.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 3.4e-69 265.8 211 60.7
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 7.5e-69 264.6 205 61.5
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.3e-68 261.5 212 59.4
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.9e-65 252.7 214 58.4
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.0e-65 251.9 176 68.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-64 250.8 211 61.1
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.5e-64 249.6 210 62.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.6e-64 248.4 205 62.4
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 7.0e-59 231.5 250 52.4
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.8e-58 228.0 218 57.8
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 7.3e-56 221.5 172 64.0
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.6e-55 219.2 209 55.0
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.2e-50 204.1 168 61.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.3e-48 194.9 206 51.9
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.0e-45 186.8 219 49.8
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.7e-44 182.6 244 46.3
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-40 171.0 175 54.3
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 5.6e-40 168.7 179 49.7
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 9.5e-40 167.9 223 45.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 8.1e-39 164.9 240 44.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 6.0e-34 148.7 243 40.7
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.5e-32 143.3 232 42.2
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.3e-32 142.9 216 41.2
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.8e-31 139.8 228 39.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 8.1e-31 138.3 235 39.6
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.1e-30 136.3 233 39.5
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 8.9e-30 134.8 231 39.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.2e-29 134.4 227 39.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 4.4e-29 132.5 228 39.0
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 7.6e-29 131.7 245 37.1
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 9.9e-29 131.3 236 38.1
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 9.9e-29 131.3 236 37.7
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 9.9e-29 131.3 228 39.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.3e-28 131.0 224 39.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.7e-28 130.6 224 38.8
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.2e-28 130.2 227 38.3
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.9e-28 129.8 225 39.6
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.9e-28 129.8 226 38.1
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.9e-28 129.8 223 38.6
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.8e-28 129.4 230 37.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.8e-28 129.4 233 36.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.8e-28 129.4 219 37.4
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.9e-28 129.0 231 37.2
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 4.9e-28 129.0 222 39.2
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.4e-28 128.6 226 38.1
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 6.4e-28 128.6 219 37.0
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-27 127.9 216 37.5
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.4e-27 127.5 222 37.8
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.4e-27 127.5 232 38.4
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.9e-27 127.1 249 36.1
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.9e-27 127.1 221 38.5
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.9e-27 127.1 223 40.4
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.9e-27 127.1 225 38.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.4e-27 126.7 222 37.8
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.4e-27 126.7 222 39.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.2e-27 126.3 159 47.8
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.2e-27 126.3 228 38.6
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 4.2e-27 125.9 228 38.6
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.4e-27 125.6 221 38.0
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 5.4e-27 125.6 223 37.2
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 7.1e-27 125.2 226 38.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.1e-27 125.2 221 38.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 7.1e-27 125.2 229 37.6
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.1e-27 125.2 223 38.1
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 9.3e-27 124.8 217 36.9
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.3e-27 124.8 224 37.9
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 9.3e-27 124.8 230 37.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.2e-26 124.4 226 37.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.2e-26 124.4 222 37.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.2e-26 124.4 222 37.4
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.2e-26 124.4 222 37.4
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-26 124.0 225 38.2
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.6e-26 124.0 219 37.0
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.1e-26 123.6 234 37.6
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.1e-26 123.6 220 36.4
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.1e-26 123.6 227 37.4
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.1e-26 123.6 234 35.9
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.7e-26 123.2 224 36.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.7e-26 123.2 217 37.3
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.7e-26 123.2 169 46.7
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.5e-26 122.9 233 36.9
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.6e-26 122.5 226 36.7
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 4.6e-26 122.5 220 35.9
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.6e-26 122.5 220 35.9
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.6e-26 122.5 220 35.9
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 4.6e-26 122.5 230 38.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 4.6e-26 122.5 233 36.9
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.6e-26 122.5 233 36.9
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 6.0e-26 122.1 243 38.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 6.0e-26 122.1 229 36.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.0e-26 122.1 224 36.2
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 6.0e-26 122.1 232 35.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.0e-25 121.3 214 38.8
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.0e-25 121.3 213 39.4
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.3e-25 120.9 221 37.6
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.3e-25 120.2 234 38.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.3e-25 120.2 208 38.0
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.0e-25 119.8 224 37.9
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.9e-25 119.4 222 37.8
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.1e-25 119.0 224 39.3
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 5.1e-25 119.0 219 36.1
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 6.6e-25 118.6 225 36.4
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 6.6e-25 118.6 232 35.3
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 6.6e-25 118.6 226 38.1
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.1e-24 117.9 227 37.9
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.5e-24 117.5 223 36.8
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.9e-24 117.1 223 35.0
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.5e-24 116.7 225 35.6
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 2.5e-24 116.7 223 36.3
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 3.3e-24 116.3 215 37.7
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 3.3e-24 116.3 225 36.0
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 9.6e-24 114.8 234 34.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.3e-23 114.4 225 36.0
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.1e-23 113.6 196 37.2
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.1e-23 113.6 224 35.7
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.8e-23 113.2 229 34.9
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.8e-23 113.2 223 35.4
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.6e-23 112.8 224 36.2
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 3.6e-23 112.8 220 36.4
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.6e-23 112.8 218 37.6
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 4.8e-23 112.5 229 34.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 4.8e-23 112.5 221 36.7
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.2e-23 112.1 229 34.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 6.2e-23 112.1 217 35.5
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 8.1e-23 111.7 207 36.7
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.1e-22 111.3 242 35.1
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.1e-22 111.3 199 36.2
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.8e-22 110.5 242 33.5
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.4e-22 110.2 148 43.2
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.4e-22 110.2 242 35.1
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.1e-22 109.8 62 80.6
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 4.0e-22 109.4 242 33.9
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-22 109.4 236 33.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.9e-22 108.6 214 36.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 6.9e-22 108.6 210 39.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.9e-22 108.6 235 34.5
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 6.9e-22 108.6 224 34.4
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 6.9e-22 108.6 184 39.7
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.2e-21 107.8 217 33.6
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-21 107.8 222 35.6
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.5e-21 107.5 237 32.5
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 2.0e-21 107.1 235 34.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 3.4e-21 106.3 237 34.6
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.4e-21 106.3 241 34.0
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 5.8e-21 105.5 224 33.9
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 5.8e-21 105.5 226 34.5
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.3e-20 104.4 209 36.8
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.7e-20 104.0 228 34.6
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.2e-20 103.6 199 37.2
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.9e-19 100.5 248 31.0
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.6e-18 95.9 209 34.4
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 6.0e-18 95.5 280 30.0
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.8e-15 86.7 171 36.8
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.1e-14 84.7 191 36.1
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.2e-10 71.2 183 33.3
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.6e-10 70.9 166 33.1
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.6e-10 70.9 162 34.0
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 5.1e-09 65.9 173 32.4
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 6.7e-09 65.5 37 70.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 8.7e-09 65.1 48 54.2
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.3e-08 63.2 156 33.3
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 3.7e-07 59.7 47 51.1
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 3.1e-06 56.6 139 32.4
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 3.1e-06 56.6 192 28.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.0e-06 56.2 46 50.0
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 4.0e-06 56.2 139 33.1


User provided reference genes

Program Settings