Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 2.1e-280 968.4 493 100.0
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.2e-238 829.7 493 83.6
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 4.9e-237 824.3 493 83.4
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 2.5e-212 742.3 490 77.1
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 1.6e-211 739.6 492 76.2
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.7e-211 738.8 495 74.1
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 8.7e-210 733.8 492 75.4
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 7.4e-209 730.7 494 73.9
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.2e-206 723.4 480 74.8
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 3.4e-206 721.8 495 73.1
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.5e-206 721.5 495 73.1
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 7.6e-206 720.7 495 73.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.2e-205 719.2 495 73.1
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-205 718.8 495 72.9
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-205 718.8 495 73.5
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.9e-204 716.1 492 74.4
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 3.2e-204 715.3 499 72.3
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.2e-203 713.4 501 71.7
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.0e-202 710.3 506 70.6
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.4e-202 709.9 501 71.3
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 2.3e-202 709.1 493 72.0
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.3e-202 709.1 516 69.0
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 5.1e-202 708.0 501 71.5
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 8.8e-202 707.2 502 71.3
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 2.5e-201 705.7 495 71.3
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 3.7e-200 701.8 495 72.7
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 2.4e-199 699.1 492 70.7
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 7.2e-196 687.6 503 68.6
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 7.9e-195 684.1 493 69.2
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 5.1e-194 681.4 507 68.4
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 5.1e-194 681.4 494 68.8
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 7.4e-193 677.6 492 70.3
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 2.2e-192 676.0 505 67.9
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 4.8e-192 674.9 495 69.3
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 2.4e-191 672.5 492 69.5
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 9.1e-191 670.6 494 69.2
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.2e-189 666.0 497 67.6
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 5.5e-188 661.4 494 67.4
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.2e-187 660.2 500 67.8
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 2.1e-187 659.4 490 68.2
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.7e-187 659.1 499 66.9
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 8.0e-187 657.5 503 66.8
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 2.3e-186 656.0 498 66.5
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 5.2e-186 654.8 494 67.2
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 4.4e-185 651.7 505 65.3
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 7.4e-185 651.0 492 66.7
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 8.2e-184 647.5 500 65.2
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 1.8e-183 646.4 500 65.2
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 7.0e-183 644.4 494 66.2
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.3e-181 640.2 507 65.1
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 2.9e-181 639.0 510 64.7
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 5.5e-180 634.8 492 65.2
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.4e-178 630.2 502 62.7
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 2.3e-178 629.4 499 65.7
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.2e-177 627.1 492 65.2
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 2.6e-177 625.9 490 63.7
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 9.7e-177 624.0 496 63.3
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 2.2e-176 622.9 505 62.8
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.4e-175 619.4 492 64.0
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 5.3e-175 618.2 502 64.7
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.6e-174 616.7 513 62.2
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 1.3e-173 613.6 502 64.1
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.5e-172 610.1 514 60.9
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.2e-172 609.0 518 60.8
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 9.4e-172 607.4 505 61.6
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.8e-170 603.2 492 63.0
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 4.0e-170 602.1 529 58.8
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 4.4e-169 598.6 494 62.3
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 6.3e-168 594.7 500 61.6
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.0e-166 589.7 493 62.9
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 3.5e-166 589.0 498 61.4
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.0e-165 587.4 650 52.2
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.3e-165 586.3 495 61.2
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.3e-164 582.4 492 61.4
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 4.2e-164 582.0 499 60.5
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 1.2e-163 580.5 500 61.2
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.6e-163 580.1 497 59.6
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 2.8e-163 579.3 498 60.4
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.0e-162 577.4 497 60.2
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 1.4e-162 577.0 467 61.2
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 7.5e-161 571.2 522 57.9
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.3e-160 570.5 498 57.8
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 5.4e-159 565.1 505 62.4
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 1.7e-157 560.1 499 59.7
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 2.3e-157 559.7 498 59.2
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 5.0e-157 558.5 498 59.0
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-154 550.4 499 58.5
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.5e-153 547.0 498 57.4
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.0e-153 546.6 498 57.4
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 4.9e-152 542.0 485 57.1
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 8.3e-152 541.2 498 57.0
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 1.4e-151 540.4 543 54.5
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 4.1e-151 538.9 518 55.6
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 4.1e-151 538.9 498 56.4
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 2.7e-150 536.2 487 58.3
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 1.0e-149 534.3 492 57.1
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.7e-149 533.5 499 56.7
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.5e-148 530.4 496 56.5
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 5.6e-148 528.5 499 57.5
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.5e-145 520.4 485 57.5
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 8.3e-144 514.6 369 68.6
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 1.6e-142 510.4 501 56.1
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.0e-141 507.7 400 62.5
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.1e-134 483.4 511 53.0
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 3.0e-133 479.6 390 62.6
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-130 471.1 650 45.5
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 5.3e-114 415.6 291 72.5
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 6.9e-114 415.2 407 55.3
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 4.8e-107 392.5 291 67.7
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 6.0e-102 375.6 337 60.2
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.8e-98 364.0 275 67.3
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.2e-95 353.2 268 68.3
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 2.5e-92 343.6 387 47.3
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 3.3e-92 343.2 340 56.2
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 5.0e-88 329.3 302 60.6
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 3.2e-87 326.6 501 37.3
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 8.8e-85 318.5 486 38.5
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.3e-83 314.7 494 39.1
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 2.4e-82 310.5 325 55.1
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.5e-81 307.8 488 37.5
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 7.7e-81 305.4 510 35.9
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.1e-66 258.5 290 49.3
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.6e-65 253.8 230 55.7
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 4.2e-63 246.5 139 84.9
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 9.7e-60 235.3 192 59.4
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 2.7e-57 227.3 159 72.3
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 5.4e-50 203.0 205 52.2
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 1.6e-41 174.9 102 79.4
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.0e-40 172.2 526 26.0
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 9.5e-39 165.6 83 94.0
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.2e-38 165.2 101 76.2
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.2e-36 158.7 158 57.6
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 6.4e-35 152.9 123 61.0
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 9.2e-34 149.1 85 84.7
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 8.9e-29 132.5 125 53.6
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.2e-28 132.1 99 61.6
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 9.8e-28 129.0 134 49.3
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.3e-24 118.6 103 62.1
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.9e-24 117.1 55 94.5
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.6e-24 115.9 100 60.0
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.1e-21 107.5 83 61.4
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.9e-19 100.1 51 86.3
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 2.1e-17 94.7 107 48.6
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 3.9e-16 90.5 101 46.5
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 8.6e-16 89.4 74 60.8
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 4.3e-15 87.0 66 62.1
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 8.1e-14 82.8 159 39.0
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 5.2e-13 80.1 129 36.4
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.7e-11 75.1 107 40.2
FvH4_7g08791 Fragaria vesca HOM05D004567 ORTHO05D045614 1.5e-07 62.0 65 56.9
FAN10G2073 Fragaria x ananassa HOM05D004567 ORTHO05D045614 1.6e-06 58.5 82 50.0
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 8.1e-06 56.2 76 36.8


User provided reference genes

Program Settings