Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.0e-89 332.4 168 100.0
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.9e-78 293.9 167 86.2
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 2.3e-77 292.4 166 85.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.4e-74 283.1 168 83.9
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 4.0e-74 281.6 167 83.2
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 8.4e-72 273.9 168 78.0
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 5.1e-69 264.6 168 76.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 5.1e-69 264.6 164 76.2
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 6.7e-69 264.2 168 76.2
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.7e-68 261.2 168 76.8
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.3e-67 260.0 168 76.8
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.6e-67 259.6 168 75.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.8e-67 258.1 168 76.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 4.8e-67 258.1 168 75.0
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 8.2e-67 257.3 166 77.1
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.1e-66 256.9 167 74.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 3.1e-66 255.4 168 73.2
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.1e-66 255.0 168 72.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.1e-66 255.0 168 76.2
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.3e-66 254.6 165 76.4
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.3e-66 254.6 168 75.6
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 9.0e-66 253.8 164 76.2
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.2e-65 253.4 165 73.9
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.0e-65 252.7 166 75.3
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.6e-65 252.3 166 74.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.5e-65 251.5 164 73.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 5.9e-65 251.1 164 75.0
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.0e-64 250.4 168 75.6
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.7e-64 249.6 165 72.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.7e-64 249.6 168 73.2
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.2e-64 249.2 163 73.6
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.9e-64 248.8 163 73.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 6.5e-64 247.7 163 73.0
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 8.4e-64 247.3 167 73.1
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.1e-63 246.9 163 75.5
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.4e-63 246.5 164 72.0
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.9e-63 246.1 168 73.2
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.5e-63 245.7 168 73.2
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 9.3e-63 243.8 163 72.4
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 9.3e-63 243.8 172 73.3
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-62 243.4 163 72.4
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 6.1e-62 241.1 164 71.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 7.9e-62 240.7 168 72.0
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-61 240.4 168 68.5
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-61 239.6 163 76.1
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.8e-61 239.6 164 70.7
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 6.7e-61 237.7 163 74.8
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 6.7e-61 237.7 156 76.9
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.9e-60 236.1 171 70.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.5e-60 235.7 168 68.5
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.5e-60 235.7 171 70.2
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.5e-60 235.7 165 70.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.3e-60 235.0 169 69.2
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.7e-60 234.6 171 69.6
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.4e-60 234.2 168 68.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.8e-59 232.3 166 70.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.8e-59 231.5 158 70.9
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 8.2e-59 230.7 168 66.1
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.4e-58 229.2 168 68.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.4e-58 229.2 164 68.9
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 6.9e-58 227.6 168 67.9
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.0e-57 226.1 168 66.1
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.6e-57 225.7 164 68.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.0e-56 223.8 164 71.3
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.0e-56 223.8 164 72.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.3e-56 223.4 158 69.6
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.7e-56 223.0 165 69.1
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.2e-56 222.6 167 68.3
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.2e-56 222.6 164 72.6
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.8e-56 221.9 164 73.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 5.0e-56 221.5 164 68.3
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 5.0e-56 221.5 164 72.6
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 5.0e-56 221.5 163 66.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.5e-56 220.7 167 66.5
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 8.5e-56 220.7 164 73.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.5e-56 220.7 164 73.2
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.4e-55 219.9 164 73.2
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.2e-55 218.8 166 68.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 4.2e-55 218.4 170 67.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 7.2e-55 217.6 167 65.9
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.4e-55 217.2 163 64.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 9.4e-55 217.2 170 62.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.2e-54 216.9 166 71.7
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-54 216.5 163 64.4
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.1e-54 216.1 167 65.9
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.6e-54 215.3 167 65.9
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 7.9e-54 214.2 158 67.7
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.3e-53 212.6 169 63.9
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.3e-53 212.6 167 63.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.1e-52 210.3 163 64.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.5e-52 209.9 167 65.9
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.0e-52 209.5 165 65.5
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.0e-52 209.5 167 65.9
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.3e-52 208.8 160 66.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 3.3e-52 208.8 168 64.9
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 3.3e-52 208.8 168 64.9
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.3e-52 208.8 169 63.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 4.3e-52 208.4 168 64.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 7.4e-52 207.6 168 64.3
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.8e-51 205.7 170 62.9
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.3e-51 204.5 167 64.1
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 8.2e-51 204.1 168 63.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.5e-49 199.9 131 74.0
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.4e-49 198.7 168 62.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 5.9e-49 198.0 158 62.0
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.0e-48 197.2 125 75.2
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.7e-48 196.4 171 62.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.9e-48 195.7 164 59.1
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-46 189.9 168 57.7
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 4.7e-46 188.3 167 59.3
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 4.7e-46 188.3 167 59.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 6.7e-45 184.5 125 71.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 6.3e-43 177.9 127 74.8
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.4e-42 176.8 162 57.4
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.7e-41 171.0 166 56.6
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.7e-40 169.9 135 65.2
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.9e-40 169.1 125 64.8
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.8e-40 168.7 166 54.8
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.0e-40 168.3 166 56.0
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.0e-40 168.3 166 56.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.0e-40 168.3 128 66.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 6.5e-40 167.9 157 56.1
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.7e-38 162.5 163 52.8
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 5.7e-36 154.8 172 52.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 8.2e-35 151.0 130 59.2
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.1e-34 148.7 113 64.6
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.0e-33 146.4 158 48.1
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 7.7e-33 144.4 163 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.8e-32 142.1 161 49.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 3.8e-32 142.1 124 56.5
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.1e-31 140.6 126 57.9
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-31 140.2 167 49.1
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.2e-31 139.0 131 50.4
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 4.2e-31 138.7 99 64.6
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.2e-30 137.1 176 48.3
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.0e-30 134.4 155 49.7
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 8.8e-29 131.0 89 71.9
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.2e-27 126.3 135 47.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.0e-25 119.8 163 45.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.7e-25 119.4 159 41.5
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 7.7e-25 117.9 80 71.2
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.2e-23 112.5 121 44.6
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 4.2e-23 112.1 81 64.2
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.3e-21 106.3 145 44.1
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.3e-19 100.5 68 75.0
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.9e-19 98.6 61 80.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-18 97.4 66 75.8
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.4e-18 96.3 70 61.4
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.1e-18 95.9 61 80.3
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.4e-18 95.1 57 84.2
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.4e-18 95.1 57 84.2
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.5e-17 92.4 53 88.7
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-14 83.6 64 65.6
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.1e-14 83.2 80 53.8
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.8e-13 80.1 62 62.9
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 4.0e-13 79.0 63 52.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.5e-12 77.0 81 51.9
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.5e-12 77.0 76 46.1
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.9e-11 72.8 89 53.9
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 2.9e-11 72.8 109 39.4
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.2e-10 69.3 60 61.7
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.5e-09 65.9 120 35.8
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.3e-08 63.2 44 56.8
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 6.6e-08 61.6 99 36.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 8.6e-08 61.2 63 41.3
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.2e-06 57.4 65 38.5
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 2.8e-06 56.2 99 35.4


User provided reference genes

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