Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 5.5e-197 691.0 418 100.0
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.7e-166 589.7 417 84.9
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.0e-155 553.9 416 70.4
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 2.7e-151 539.3 412 69.7
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 3.5e-151 538.9 417 69.1
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.0e-150 537.3 418 69.4
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.9e-149 533.1 416 68.5
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.9e-149 533.1 413 68.5
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 7.3e-149 531.2 412 68.0
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.8e-147 526.6 413 68.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 4.0e-147 525.4 513 59.6
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 5.2e-147 525.0 413 67.1
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.2e-146 523.9 413 70.7
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 2.0e-146 523.1 412 67.7
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.0e-146 523.1 419 68.5
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.6e-146 522.7 416 67.3
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 4.4e-146 521.9 400 69.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 4.4e-146 521.9 413 67.6
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 5.4e-144 515.0 415 68.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.2e-143 513.8 413 66.3
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 4.6e-143 511.9 415 67.5
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.3e-142 510.4 418 65.3
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.7e-142 510.0 444 64.0
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.3e-141 505.4 417 65.5
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.3e-141 504.6 417 65.2
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 1.2e-140 503.8 418 65.6
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.1e-140 503.1 415 63.4
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 2.8e-140 502.7 418 64.8
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.8e-140 502.7 412 66.7
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 3.6e-140 502.3 410 64.6
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 4.7e-140 501.9 417 65.0
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 5.2e-139 498.4 413 66.8
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 2.0e-138 496.5 403 67.0
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 3.4e-138 495.7 449 61.7
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 4.4e-138 495.4 418 62.9
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 5.8e-138 495.0 424 63.7
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.3e-137 493.8 416 63.7
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 2.2e-137 493.0 399 65.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 6.4e-137 491.5 411 63.3
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 3.2e-136 489.2 418 62.4
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 7.1e-136 488.0 411 63.7
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 1.2e-135 487.3 412 71.4
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.1e-135 486.5 411 65.7
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 3.9e-134 482.3 412 63.8
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 6.6e-134 481.5 414 62.6
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.9e-133 479.9 412 73.3
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 3.3e-133 479.2 413 62.7
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.3e-133 478.0 412 73.3
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 8.1e-132 474.6 414 61.4
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.4e-131 473.8 421 62.9
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 3.1e-131 472.6 429 60.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 2.6e-130 469.5 461 57.5
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 9.9e-130 467.6 458 58.1
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.7e-129 466.8 455 57.8
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.7e-129 466.8 442 63.3
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.2e-129 466.5 418 61.0
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 3.8e-129 465.7 300 77.7
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 3.8e-129 465.7 412 71.1
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 6.4e-129 464.9 455 57.8
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 8.4e-129 464.5 442 58.8
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.9e-128 463.4 398 63.1
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 5.4e-128 461.8 304 76.0
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 7.1e-128 461.5 423 72.1
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 3.5e-127 459.1 428 60.5
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 4.6e-127 458.8 379 64.6
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.0e-127 458.4 396 61.6
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 6.0e-127 458.4 392 63.8
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 7.8e-127 458.0 455 56.7
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 7.8e-127 458.0 448 69.4
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 2.3e-126 456.4 468 56.0
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 3.0e-126 456.1 450 57.3
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 3.9e-126 455.7 438 58.0
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 5.1e-126 455.3 391 63.2
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 8.7e-126 454.5 411 58.2
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.5e-125 453.8 405 61.7
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 2.5e-125 453.0 412 74.0
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 5.6e-125 451.8 439 59.0
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 9.6e-125 451.1 460 56.5
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 2.1e-124 449.9 461 56.8
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 3.6e-124 449.1 463 56.2
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 6.2e-124 448.4 285 78.6
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.2e-122 444.1 464 55.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.8e-122 441.8 396 60.1
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 2.9e-121 439.5 459 56.0
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 2.9e-121 439.5 459 56.0
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 9.3e-120 434.5 363 64.5
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.8e-118 430.3 299 72.6
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 5.1e-118 428.7 410 57.3
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.5e-117 427.2 420 57.9
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 3.7e-116 422.5 415 58.6
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.2e-114 417.5 421 58.0
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.5e-114 417.2 417 56.1
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.6e-114 416.4 381 58.0
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 1.3e-113 414.1 413 58.8
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 8.4e-113 411.4 411 55.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.4e-112 410.6 419 54.4
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.9e-112 410.2 461 52.7
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 7.9e-111 404.8 302 70.2
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 7.9e-111 404.8 302 70.2
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 2.3e-110 403.3 408 53.9
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.7e-108 396.0 419 56.8
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-107 394.4 398 58.0
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-107 394.4 419 56.3
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.3e-107 392.1 419 56.1
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.2e-106 391.0 398 57.8
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.6e-106 389.8 428 54.4
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 9.0e-99 364.8 419 50.8
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.7e-97 360.5 270 67.8
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.8e-94 350.5 300 58.7
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 3.9e-94 349.4 306 60.5
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 6.1e-87 325.5 267 65.5
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 7.9e-87 325.1 332 52.7
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 3.6e-79 299.7 299 52.5
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.0e-78 298.1 423 46.1
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.6e-74 284.3 288 55.6
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.0e-70 270.0 271 56.5
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 3.0e-62 243.4 270 50.7
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.5e-61 241.1 255 52.2
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.7e-60 237.7 157 77.7
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.5e-56 221.9 150 71.3
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 3.0e-54 216.9 369 36.9
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.7e-52 209.9 148 73.0
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.6e-50 204.5 149 71.8
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 8.9e-46 188.7 124 78.2
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.6e-42 176.4 115 75.7
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 7.0e-35 152.5 191 46.1
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.7e-31 139.8 79 83.5
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.4e-22 111.7 147 46.9
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 2.9e-20 104.0 72 69.4
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.6e-15 88.2 66 69.7
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 6.9e-14 82.8 411 22.6
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 6.0e-10 69.7 70 51.4
CiPaw.13G018400 Carya illinoinensis HOM05D005841 ORTHO05D007132 1.3e-09 68.6 41 87.8
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.3e-09 68.6 52 69.2
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.7e-09 68.2 49 73.5


User provided reference genes

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