Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.3e-69 264.2 133 100.0
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.5e-63 246.1 131 91.6
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 2.2e-62 242.3 131 90.1
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.1e-61 240.0 131 88.5
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 1.5e-60 236.1 133 86.5
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 1.5e-60 236.1 133 85.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 4.5e-60 234.6 133 85.0
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.0e-59 233.4 133 86.5
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 1.0e-59 233.4 133 83.5
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.9e-59 231.9 133 83.5
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.8e-59 231.5 133 83.5
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.5e-59 230.7 133 82.7
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 6.5e-59 230.7 133 82.7
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 8.5e-59 230.3 133 84.2
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 3.2e-58 228.4 133 82.7
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 9.4e-58 226.9 141 80.1
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 1.2e-57 226.5 133 83.5
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 2.1e-57 225.7 131 84.0
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 2.7e-57 225.3 133 82.0
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 1.8e-56 222.6 133 80.5
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 3.9e-56 221.5 133 80.5
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 5.1e-56 221.1 133 81.2
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 6.7e-56 220.7 127 83.5
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 79.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 79.7
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 81.2
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 81.2
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.5e-55 219.5 133 82.0
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.5e-55 219.5 133 78.9
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 2.0e-55 219.2 133 78.9
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 2.5e-55 218.8 133 78.2
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 4.3e-55 218.0 130 80.8
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 7.4e-55 217.2 133 78.9
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.7e-54 216.1 131 77.1
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.7e-54 216.1 133 78.2
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 2.2e-54 215.7 133 78.9
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 2.2e-54 215.7 133 75.9
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.2e-54 215.7 133 78.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.2e-54 215.7 133 78.2
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 2.8e-54 215.3 133 75.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 2.8e-54 215.3 133 80.5
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 3.7e-54 214.9 133 76.7
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 4.8e-54 214.5 132 77.3
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 8.2e-54 213.8 132 77.3
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.1e-53 213.4 131 76.3
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.1e-53 213.4 131 76.3
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 1.4e-53 213.0 133 75.9
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 1.8e-53 212.6 133 77.4
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.8e-53 212.6 133 75.9
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 2.4e-53 212.2 131 79.4
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 2.4e-53 212.2 133 76.7
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 4.1e-53 211.5 131 79.4
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 5.3e-53 211.1 125 81.6
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 6.9e-53 210.7 136 75.7
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 1.5e-52 209.5 126 79.4
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.4e-52 208.4 125 77.6
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.4e-52 208.4 125 77.6
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 3.4e-52 208.4 133 76.7
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 5.9e-52 207.6 132 75.0
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.7e-51 206.1 131 74.0
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 2.2e-51 205.7 131 74.8
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 2.9e-51 205.3 132 75.0
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 3.8e-51 204.9 132 74.2
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 1.1e-50 203.4 131 77.1
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.1e-50 203.4 133 75.9
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 3.2e-50 201.8 131 74.8
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.2e-50 201.8 133 78.2
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 3.2e-50 201.8 132 75.8
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.2e-50 201.8 132 72.0
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.2e-50 201.4 131 71.8
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 5.5e-50 201.1 131 74.8
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 5.5e-50 201.1 132 72.0
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 9.4e-50 200.3 131 74.0
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.0
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.0
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.0
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.6e-49 199.5 131 74.0
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.1e-49 199.1 125 76.8
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 2.1e-49 199.1 133 72.9
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 2.7e-49 198.7 131 74.0
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 2.7e-49 198.7 131 74.0
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.7e-49 198.7 133 71.4
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 3.6e-49 198.4 131 74.0
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 4.7e-49 198.0 131 73.3
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 4.7e-49 198.0 130 73.1
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.4e-48 196.4 129 73.6
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.4e-48 196.4 131 73.3
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.8e-48 196.1 131 72.5
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 3.0e-48 195.3 129 72.9
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 5.1e-48 194.5 123 72.4
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.1e-47 193.4 129 72.9
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.5e-47 193.0 129 72.9
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 2.0e-47 192.6 140 69.3
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 2.0e-47 192.6 140 69.3
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 2.0e-47 192.6 133 70.7
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 2.0e-47 192.6 133 72.2
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 2.6e-47 192.2 133 70.7
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 3.3e-47 191.8 141 68.8
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 3.3e-47 191.8 134 71.6
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 5.7e-47 191.0 140 68.6
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 7.4e-47 190.7 144 67.4
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 7.4e-47 190.7 132 70.5
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 9.7e-47 190.3 127 73.2
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 1.3e-46 189.9 138 68.8
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 1.3e-46 189.9 138 68.8
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 6.3e-46 187.6 132 68.9
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.4e-45 185.7 158 60.1
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 7.0e-45 184.1 172 57.6
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 3.2e-42 175.3 133 66.9
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 4.2e-42 174.9 133 66.2
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.0e-40 170.2 131 64.9
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 2.2e-38 162.5 104 77.9
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 1.8e-37 159.5 131 60.3
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 9.1e-37 157.1 131 66.4
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 9.1e-37 157.1 95 78.9
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.9e-35 152.1 129 59.7
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 8.5e-35 150.6 129 59.7
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 55.4
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 8.8e-32 140.6 93 73.1
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 5.7e-31 137.9 134 52.2
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.7e-27 126.3 75 81.3
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.9e-27 125.6 76 80.3
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.1e-26 123.6 71 83.1
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.5e-26 123.2 75 80.0
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 5.5e-26 121.3 72 80.6
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.6e-25 118.6 71 81.7
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 4.7e-25 118.2 71 78.9
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.0e-24 117.1 62 87.1
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.0e-24 117.1 62 87.1
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 1.2e-23 113.6 65 83.1
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 7.5e-23 110.9 72 76.4
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 3.7e-22 108.6 62 80.6
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 8.3e-22 107.5 62 79.0
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 9.1e-21 104.0 70 70.0
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 2.0e-20 102.8 127 40.9
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.5e-20 102.1 72 65.3
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 2.3e-19 99.4 77 62.3
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 2.9e-19 99.0 78 65.4
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 1.6e-17 93.2 64 68.8
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 8.9e-16 87.4 77 59.7
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 5.7e-15 84.7 56 67.9
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.3e-14 80.9 53 71.7
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 7.0e-13 77.8 74 48.6
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 3.5e-12 75.5 116 35.3
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 4.5e-12 75.1 58 63.8
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 2.1e-09 66.2 104 29.8
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 3.1e-08 62.4 105 35.2
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 5.2e-08 61.6 74 36.5


User provided reference genes

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