Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.5e-71 271.2 137 100.0
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.5e-30 134.0 135 65.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.3e-25 117.9 125 60.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.8e-22 108.6 137 53.3
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.8e-22 108.6 137 53.3
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.3e-17 93.6 140 46.4
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-17 93.6 140 46.4
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 3.7e-17 92.0 142 48.6
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.0e-16 87.8 142 46.5
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.2e-15 87.0 141 45.4
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.6e-15 86.7 138 42.8
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 2.7e-15 85.9 130 46.9
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.9e-15 84.7 141 48.2
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.8e-14 82.0 139 42.4
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 5.0e-14 81.6 122 47.5
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 8.5e-14 80.9 141 44.7
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.2e-13 78.6 141 40.4
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.2e-13 78.6 141 41.8
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 9.4e-13 77.4 85 54.1
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-12 77.0 142 40.8
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.2e-12 77.0 139 39.6
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.2e-12 77.0 152 40.8
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.7e-12 75.9 98 46.9
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 3.6e-12 75.5 122 43.4
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 8.0e-12 74.3 151 39.1
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.0e-11 73.9 77 57.1
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.4e-11 73.6 85 55.3
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 2.3e-11 72.8 64 62.5
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 3.0e-11 72.4 98 48.0
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 3.0e-11 72.4 138 37.7
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.0e-11 72.0 65 61.5
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 5.2e-11 71.6 79 55.7
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.8e-11 71.2 58 65.5
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 6.8e-11 71.2 69 60.9
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 6.8e-11 71.2 85 51.8
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 1.2e-10 70.5 63 63.5
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.2e-10 70.5 65 58.5
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.0e-10 69.7 77 54.5
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.0e-10 69.7 91 51.6
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 2.0e-10 69.7 79 54.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.6e-10 69.3 88 51.1
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.4e-10 68.9 58 62.1
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 4.4e-10 68.6 85 50.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 5.7e-10 68.2 90 47.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.7e-10 68.2 78 53.8
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.7e-10 68.2 78 53.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.7e-10 68.2 119 42.0
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 7.5e-10 67.8 126 41.3
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.5e-10 67.8 78 53.8
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 7.5e-10 67.8 122 45.1
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 9.8e-10 67.4 135 40.0
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.7e-09 66.6 93 49.5
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.7e-09 66.6 73 58.9
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 2.2e-09 66.2 47 70.2
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 3.7e-09 65.5 95 46.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 3.7e-09 65.5 69 53.6
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 3.7e-09 65.5 126 38.9
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 4.8e-09 65.1 121 38.0
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 4.8e-09 65.1 107 40.2
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 4.8e-09 65.1 64 53.1
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 6.3e-09 64.7 98 45.9
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.3e-09 64.3 82 52.4
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 8.3e-09 64.3 110 42.7
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 8.3e-09 64.3 130 36.2
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.1e-08 63.9 68 52.9
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.1e-08 63.9 54 63.0
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 1.4e-08 63.5 57 59.6
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.4e-08 63.5 143 35.0
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 1.8e-08 63.2 96 45.8
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.8e-08 63.2 62 58.1
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.8e-08 63.2 96 45.8
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 1.8e-08 63.2 124 39.5
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.8e-08 63.2 49 63.3
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 2.4e-08 62.8 132 42.4
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 2.4e-08 62.8 58 67.2
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.1e-08 62.4 64 54.7
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 3.1e-08 62.4 131 37.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 4.1e-08 62.0 51 64.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.1e-08 62.0 96 41.7
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 4.1e-08 62.0 121 36.4
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 5.4e-08 61.6 56 58.9
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 5.4e-08 61.6 56 55.4
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 7.0e-08 61.2 135 38.5
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 7.0e-08 61.2 60 53.3
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 7.0e-08 61.2 54 63.0
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 7.0e-08 61.2 98 40.8
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 9.1e-08 60.8 113 36.3
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 9.1e-08 60.8 87 44.8
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 9.1e-08 60.8 58 55.2
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 9.1e-08 60.8 57 59.6
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 1.2e-07 60.5 50 62.0
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.6e-07 60.1 137 35.0
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.6e-07 60.1 85 45.9
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.6e-07 60.1 72 51.4
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.6e-07 60.1 136 42.6
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 2.0e-07 59.7 89 39.3
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.0e-07 59.7 147 34.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.0e-07 59.7 68 52.9
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.0e-07 59.7 43 69.8
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 2.0e-07 59.7 43 74.4
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.0e-07 59.7 86 48.8
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 2.0e-07 59.7 74 48.6
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.0e-07 59.7 71 50.7
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 2.0e-07 59.7 73 53.4
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.7e-07 59.3 77 48.1
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 2.7e-07 59.3 45 68.9
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.7e-07 59.3 64 56.2
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 2.7e-07 59.3 84 42.9
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.5e-07 58.9 43 69.8
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 3.5e-07 58.9 56 57.1
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.5e-07 58.9 43 69.8
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 3.5e-07 58.9 90 43.3
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 3.5e-07 58.9 64 53.1
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 4.5e-07 58.5 87 47.1
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.5e-07 58.5 58 58.6
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 4.5e-07 58.5 129 34.9
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.5e-07 58.5 40 70.0
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.9e-07 58.2 102 40.2
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.9e-07 58.2 61 54.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 5.9e-07 58.2 75 46.7
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 7.7e-07 57.8 111 36.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.0e-06 57.4 40 70.0
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.0e-06 57.4 86 46.5
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.0e-06 57.4 50 58.0
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.0e-06 57.4 41 68.3
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.0e-06 57.4 65 50.8
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.3e-06 57.0 40 67.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 82 43.9
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.3e-06 57.0 39 66.7
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.3e-06 57.0 117 35.9
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.7e-06 56.6 61 52.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 93 39.8
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 1.7e-06 56.6 54 53.7
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.3e-06 56.2 109 33.0
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.3e-06 56.2 38 71.1
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 2.3e-06 56.2 47 59.6
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 2.3e-06 56.2 47 59.6
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 2.3e-06 56.2 36 75.0
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.9e-06 55.8 47 57.4
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.9e-06 55.8 107 40.2
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.9e-06 55.8 40 67.5
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.8e-06 55.5 44 61.4
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 3.8e-06 55.5 112 34.8
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.8e-06 55.5 62 53.2
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.0e-06 55.1 61 47.5
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.0e-06 55.1 98 40.8
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.0e-06 55.1 41 63.4
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 6.6e-06 54.7 62 53.2
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 6.6e-06 54.7 143 35.0
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.6e-06 54.7 58 51.7
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 6.6e-06 54.7 82 39.0
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 6.6e-06 54.7 72 47.2
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.6e-06 54.7 51 52.9
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 6.6e-06 54.7 42 61.9
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 8.6e-06 54.3 52 59.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 8.6e-06 54.3 62 53.2
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.6e-06 54.3 80 41.2
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.6e-06 54.3 80 41.2
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 8.6e-06 54.3 99 38.4


User provided reference genes

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