Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 8.6e-66 253.4 123 100.0
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 6.7e-42 174.1 115 76.5
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.4e-39 166.4 117 72.6
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.4e-39 166.4 117 72.6
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 1.2e-35 153.3 116 65.5
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 2.7e-35 152.1 116 65.5
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 8.4e-29 130.6 121 57.0
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.1e-28 130.2 124 53.2
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 3.2e-28 128.6 116 52.6
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.6e-27 124.8 116 55.2
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 6.0e-27 124.4 92 63.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 6.0e-27 124.4 117 54.7
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 7.9e-27 124.0 122 54.9
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.5e-25 119.8 123 52.8
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 3.3e-25 118.6 119 52.9
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.4e-25 117.5 108 58.3
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.8e-24 115.5 98 61.2
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.4e-23 113.2 116 53.4
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 2.4e-23 112.5 119 53.8
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 4.1e-23 111.7 123 48.0
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 4.1e-23 111.7 116 49.1
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 4.1e-23 111.7 116 50.9
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 6.9e-23 110.9 123 48.0
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 1.5e-22 109.8 120 50.8
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.5e-22 109.8 122 47.5
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.5e-22 109.8 122 47.5
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 4.5e-22 108.2 99 51.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.8e-21 105.1 95 54.7
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 3.8e-21 105.1 91 59.3
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 5.0e-21 104.8 92 56.5
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 1.1e-20 103.6 99 53.5
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 2.5e-20 102.4 123 45.5
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 3.2e-20 102.1 126 49.2
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 3.2e-20 102.1 101 54.5
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 4.2e-20 101.7 122 46.7
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 5.5e-20 101.3 82 61.0
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 5.5e-20 101.3 108 50.0
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 7.2e-20 100.9 89 52.8
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 3.6e-19 98.6 104 52.9
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 7.9e-19 97.4 96 54.2
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.0e-18 97.1 96 53.1
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.8e-18 96.3 135 46.7
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.1e-17 93.6 116 44.0
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 2.5e-17 92.4 91 56.0
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 3.3e-17 92.0 69 59.4
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 2.2e-16 89.4 64 60.9
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 2.8e-16 89.0 94 51.1
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 3.7e-16 88.6 97 50.5
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.7e-16 88.6 56 71.4
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 3.7e-16 88.6 117 46.2
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 4.8e-16 88.2 56 71.4
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 6.3e-16 87.8 68 60.3
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 5.3e-15 84.7 127 41.7
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 5.3e-15 84.7 55 69.1
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 6.9e-15 84.3 104 46.2
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 2.0e-14 82.8 48 75.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 1.0e-13 80.5 48 72.9
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.7e-13 79.7 125 44.0
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.1e-12 77.0 124 42.7
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 1.6e-11 73.2 106 42.5
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.0e-10 70.5 105 41.9
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.0e-10 70.5 105 41.9
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.8e-10 69.7 102 45.1
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 2.3e-10 69.3 105 41.0
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.0e-10 68.9 45 68.9
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.0e-10 68.9 45 68.9
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 3.9e-10 68.6 106 40.6
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 3.9e-10 68.6 106 40.6
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.5e-09 66.6 115 39.1
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 4.4e-09 65.1 43 69.8
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 4.4e-09 65.1 112 37.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 5.7e-09 64.7 91 46.2
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 9.7e-09 63.9 79 48.1
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 9.7e-09 63.9 112 40.2
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 9.7e-09 63.9 112 40.2
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 1.7e-08 63.2 113 38.1
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 3.7e-08 62.0 120 35.8
Mapoly0032s0107 Marchantia polymorpha HOM05D025110 ORTHO05D009967 2.4e-07 59.3 123 35.8
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 1.2e-06 57.0 34 70.6
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 2.0e-06 56.2 80 45.0
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 3.4e-06 55.5 34 70.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 5.9e-06 54.7 104 40.4


User provided reference genes

Program Settings