Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 0.0e+00 1589.3 808 100.0
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 4.6e-309 1064.3 821 71.0
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 6.8e-260 901.0 834 63.3
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 2.2e-194 683.3 843 51.5
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 8.5e-178 628.2 845 49.9
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 2.7e-176 623.2 834 48.4
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 1.0e-175 621.3 920 46.0
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.8e-175 620.5 835 47.8
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.7e-175 618.6 835 47.8
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.8e-173 613.2 831 48.0
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 8.2e-173 611.7 819 49.0
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.6e-168 596.3 854 46.6
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.9e-167 592.8 849 46.5
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 8.8e-167 591.7 815 46.5
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 7.4e-166 588.6 840 45.7
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.4e-164 583.6 835 46.2
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 4.5e-163 579.3 813 47.5
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 6.1e-160 568.9 813 47.6
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.8e-159 567.4 845 44.7
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 1.5e-158 564.3 843 46.3
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 2.8e-157 560.1 819 47.0
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.5e-153 547.0 847 44.5
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 4.4e-142 509.6 836 42.0
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 5.7e-142 509.2 786 45.8
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 3.7e-141 506.5 850 42.8
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 1.2e-139 501.5 828 42.6
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 7.7e-139 498.8 847 42.7
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 1.3e-138 498.0 627 49.0
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 5.0e-138 496.1 872 40.6
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 2.5e-137 493.8 847 42.1
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 1.2e-136 491.5 850 41.8
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.1e-136 490.7 672 47.2
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 4.9e-133 479.6 824 40.9
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 4.1e-132 476.5 850 40.9
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 4.6e-131 473.0 856 40.9
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 6.6e-130 469.2 846 41.0
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.6e-128 464.5 1014 35.7
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 8.9e-127 458.8 722 45.6
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 7.5e-126 455.7 781 42.0
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 1.5e-121 441.4 882 39.6
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 4.3e-121 439.9 853 39.6
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 9.5e-121 438.7 550 48.5
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 3.6e-120 436.8 909 38.8
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 1.1e-119 435.3 862 38.9
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 3.1e-119 433.7 862 38.9
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 4.0e-119 433.3 855 39.2
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.1e-116 425.2 884 38.8
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 4.1e-116 423.3 873 38.4
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 2.7e-115 420.6 852 37.9
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 2.3e-111 407.5 851 36.4
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 3.1e-111 407.1 963 33.7
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 8.9e-111 405.6 885 37.2
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 3.4e-110 403.7 791 39.2
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 7.6e-110 402.5 861 37.2
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 6.4e-109 399.4 625 45.1
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 1.1e-108 398.7 820 38.9
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 5.4e-108 396.4 797 38.6
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 5.4e-108 396.4 847 36.1
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.3e-106 391.0 797 37.5
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 8.6e-106 389.0 814 35.9
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 8.9e-103 379.0 859 36.8
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 1.2e-102 378.6 663 40.9
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 1.7e-101 374.8 886 35.8
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.1e-100 372.1 839 35.0
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 1.2e-99 368.6 508 44.5
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 6.9e-95 352.8 903 34.3
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 5.8e-94 349.7 808 35.3
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.2e-93 347.8 801 33.8
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.2e-91 342.0 809 35.2
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.6e-91 341.7 885 34.4
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 2.1e-91 341.3 742 36.7
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 7.9e-91 339.3 811 34.0
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 6.7e-90 336.3 653 38.3
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 9.6e-89 332.4 804 34.5
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 1.1e-87 328.9 912 32.9
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 9.9e-86 322.4 918 30.9
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 4.2e-84 317.0 821 32.4
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 9.3e-84 315.8 815 33.4
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 1.6e-83 315.1 831 33.5
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 2.7e-83 314.3 803 35.4
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 2.3e-82 311.2 732 36.6
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 6.7e-82 309.7 809 35.1
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 8.7e-82 309.3 823 34.1
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.9e-81 308.1 901 32.2
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 3.3e-81 307.4 804 34.3
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 3.3e-81 307.4 804 34.3
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 4.3e-81 307.0 906 32.5
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 9.6e-81 305.8 853 32.0
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 2.1e-80 304.7 286 59.4
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 5.8e-78 296.6 801 33.0
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.6e-75 288.5 629 37.0
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 3.9e-74 283.9 801 34.3
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.9e-73 281.6 801 34.2
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 8.7e-66 256.1 613 36.5
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 4.2e-60 237.3 688 34.2
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 9.4e-60 236.1 620 32.9
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.7e-59 234.6 607 32.9
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 1.4e-58 232.3 633 35.9
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 6.3e-56 223.4 858 29.4
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 3.1e-55 221.1 826 28.9
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 9.1e-55 219.5 657 30.6
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.7e-53 215.3 674 31.5
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 4.2e-52 210.7 760 29.1
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.2e-51 209.1 639 31.5
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 4.8e-48 197.2 660 29.8
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.3e-45 189.1 165 61.2
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 1.7e-40 172.2 637 31.6
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 2.9e-29 134.8 276 38.4
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 5.9e-22 110.5 213 36.6
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 3.8e-21 107.8 158 46.2
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 3.1e-10 71.6 584 21.7
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 2.6e-09 68.6 63 57.1
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 6.4e-08 63.9 384 24.5
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 6.4e-08 63.9 384 24.5
TAR623G1737 Trochodendron aralioides HOM05D001393 ORTHO05D007477 5.4e-07 60.8 259 29.0
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 3.5e-06 58.2 514 21.4


User provided reference genes

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