Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.8e-35 151.0 97 100.0
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 4.5e-25 117.9 66 87.9
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.3e-24 116.3 68 83.8
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.9e-23 112.5 66 80.3
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.6e-22 107.8 97 69.1
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 5.1e-21 104.4 97 64.9
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.5e-20 102.1 66 71.2
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.5e-20 102.1 66 71.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.6e-20 100.9 69 68.1
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 9.6e-20 100.1 70 72.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.6e-19 99.4 68 69.1
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.1e-19 99.0 67 70.1
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.8e-19 98.6 70 71.4
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.8e-19 98.6 67 68.7
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 3.7e-19 98.2 57 80.7
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.2e-19 97.4 72 69.4
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.4e-18 96.3 66 68.2
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.4e-18 96.3 60 75.0
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 2.4e-18 95.5 68 67.6
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.1e-18 95.1 60 73.3
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.6e-17 92.0 60 71.7
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.6e-17 92.0 70 64.3
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.4e-17 91.7 72 63.9
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.0e-16 90.1 68 63.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.0e-16 90.1 70 61.4
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.2e-16 89.0 62 74.2
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 6.5e-16 87.4 75 58.7
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.1e-15 86.7 71 56.3
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 7.1e-15 84.0 65 66.2
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.2e-14 83.2 64 65.6
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.1e-14 82.4 68 57.4
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.1e-14 82.4 66 56.1
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.1e-14 82.4 66 56.1
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.5e-14 81.6 60 60.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 4.6e-14 81.3 65 60.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 7.9e-14 80.5 73 57.5
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.9e-14 80.5 73 57.5
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.0e-13 80.1 70 57.1
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.3e-13 79.7 71 57.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.8e-13 79.3 60 58.3
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.8e-13 79.3 71 56.3
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.3e-13 79.0 66 59.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 3.9e-13 78.2 72 55.6
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 3.9e-13 78.2 64 56.2
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 5.1e-13 77.8 73 56.2
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 6.7e-13 77.4 69 50.7
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 8.7e-13 77.0 60 68.3
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.5e-12 76.3 60 55.0
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.5e-12 76.3 70 54.3
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.9e-12 75.9 69 55.1
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.9e-12 75.9 60 56.7
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 4.3e-12 74.7 70 50.0
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.3e-12 74.7 63 63.5
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.7e-12 74.3 70 51.4
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 7.4e-12 73.9 73 50.7
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 7.4e-12 73.9 71 54.9
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 9.7e-12 73.6 69 53.6
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 9.7e-12 73.6 70 50.0
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 9.7e-12 73.6 69 53.6
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 9.7e-12 73.6 66 53.0
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.8e-11 72.0 70 50.0
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 2.8e-11 72.0 69 50.7
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.8e-11 72.0 60 53.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 3.7e-11 71.6 70 50.0
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 4.8e-11 71.2 60 53.3
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 6.3e-11 70.9 70 50.0
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 8.2e-11 70.5 70 50.0
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 8.2e-11 70.5 70 50.0
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-10 70.1 69 53.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-10 70.1 69 53.6
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 1.1e-10 70.1 58 62.1
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-10 69.3 69 53.6
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.8e-10 69.3 69 52.2
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.4e-10 68.9 70 47.1
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.4e-10 68.9 70 47.1
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 2.4e-10 68.9 70 47.1
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 2.4e-10 68.9 70 47.1
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 2.4e-10 68.9 70 47.1
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 4.1e-10 68.2 71 54.9
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 4.1e-10 68.2 68 50.0
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 5.3e-10 67.8 69 53.6
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 5.3e-10 67.8 70 50.0
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.9e-10 67.4 70 47.1
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.9e-10 67.4 69 50.7
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-09 66.6 69 50.7
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-09 66.2 69 50.7
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.0e-09 65.9 58 58.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 3.4e-09 65.1 68 44.1
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 3.4e-09 65.1 68 44.1
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 3.4e-09 65.1 68 44.1
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 7.6e-09 63.9 66 53.0
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-08 63.5 70 45.7
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-08 63.5 70 44.3
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.0e-08 63.5 70 44.3
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.3e-08 63.2 68 45.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 1.7e-08 62.8 73 49.3
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 2.2e-08 62.4 69 49.3
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 2.2e-08 62.4 69 49.3
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 2.2e-08 62.4 69 49.3
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.9e-08 62.0 68 45.6
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 2.9e-08 62.0 71 50.7
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 5.0e-08 61.2 69 47.8
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 8.5e-08 60.5 69 47.8
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 8.5e-08 60.5 62 50.0
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.5e-08 60.5 68 44.1
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 8.5e-08 60.5 66 48.5
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 1.1e-07 60.1 53 54.7
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.1e-07 60.1 58 53.4
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-07 59.7 64 46.9
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.4e-07 59.7 64 46.9
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 1.9e-07 59.3 97 37.1
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.5e-07 58.9 58 51.7
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.2e-07 58.5 63 49.2
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 4.2e-07 58.2 68 44.1
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 4.2e-07 58.2 62 48.4
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 5.5e-07 57.8 62 46.8
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.5e-07 57.8 66 47.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.5e-07 57.8 57 52.6
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 7.2e-07 57.4 69 47.8
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 9.3e-07 57.0 64 45.3
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 9.3e-07 57.0 64 45.3
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.3e-07 57.0 71 42.3
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 9.3e-07 57.0 63 46.0
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 9.3e-07 57.0 63 47.6
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-06 56.6 60 46.7
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.6e-06 56.2 64 43.8
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-06 55.8 62 45.2
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-06 55.8 62 45.2
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 2.1e-06 55.8 62 45.2
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 6.1e-06 54.3 73 42.5
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 6.1e-06 54.3 73 42.5
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 7.9e-06 53.9 63 46.0


User provided reference genes

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