Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 1.0e-131 473.4 241 100.0
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 2.4e-80 302.8 236 70.8
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.2e-74 283.9 230 68.3
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 4.0e-67 258.8 354 47.7
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 3.3e-61 239.2 242 55.0
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 3.3e-61 239.2 204 59.3
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 1.1e-59 234.2 211 55.0
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 2.0e-58 229.9 214 57.0
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 4.5e-58 228.8 214 54.2
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 3.8e-57 225.7 233 54.9
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 8.4e-57 224.6 219 54.3
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 2.4e-56 223.0 230 53.5
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 7.1e-56 221.5 171 63.7
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 2.1e-55 219.9 215 53.5
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 2.3e-54 216.5 162 64.8
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 8.7e-54 214.5 198 55.6
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.5e-53 213.8 214 51.9
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 5.6e-53 211.8 243 47.3
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 7.4e-53 211.5 214 50.9
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 2.1e-52 209.9 171 60.8
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 6.2e-52 208.4 192 55.7
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 6.2e-52 208.4 171 60.8
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.1e-51 207.6 152 65.1
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 2.6e-50 203.0 202 54.5
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 1.0e-49 201.1 170 59.4
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.7e-49 200.3 189 55.6
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.2e-49 199.9 220 51.4
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 4.9e-49 198.7 196 52.0
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 2.5e-48 196.4 176 53.4
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.5e-48 196.4 198 53.0
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.2e-47 194.1 199 53.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 3.5e-47 192.6 169 52.7
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 7.9e-47 191.4 175 52.0
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.3e-46 190.7 221 46.6
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.3e-46 190.7 171 50.9
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 8.7e-46 188.0 191 48.7
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.5e-45 187.2 188 48.4
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.5e-45 187.2 161 53.4
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 2.5e-45 186.4 215 47.9
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.3e-45 186.0 182 50.0
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 3.3e-45 186.0 182 50.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 3.3e-45 186.0 161 52.8
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 4.3e-45 185.7 182 50.0
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 9.6e-45 184.5 164 51.8
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 2.8e-44 183.0 164 51.8
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 2.8e-44 183.0 217 47.0
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 6.9e-43 178.3 163 55.8
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 9.0e-43 177.9 231 45.0
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.2e-42 177.6 232 44.4
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 1.2e-42 177.6 200 48.5
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.5e-42 177.2 236 43.2
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 3.4e-42 176.0 207 47.3
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.3e-41 174.1 230 45.7
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 5.0e-41 172.2 240 42.9
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 8.5e-41 171.4 163 52.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 1.4e-40 170.6 239 41.4
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.2e-40 169.5 156 53.8
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 4.2e-40 169.1 169 47.3
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 4.2e-40 169.1 202 47.0
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 7.2e-40 168.3 239 41.8
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 7.2e-40 168.3 202 47.0
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 9.3e-40 167.9 178 46.6
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.6e-39 167.2 164 48.2
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 4.6e-39 165.6 163 49.1
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 4.6e-39 165.6 177 46.9
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 6.1e-39 165.2 166 50.6
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.0e-38 164.5 208 42.8
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 1.0e-38 164.5 208 42.8
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.0e-38 164.5 208 42.8
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.3e-38 164.1 239 39.3
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 8.7e-38 161.4 236 39.0
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.5e-37 160.6 164 46.3
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 5.7e-37 158.7 164 47.6
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.3e-36 157.5 222 39.2
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.2e-36 156.8 164 48.8
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.1e-35 154.5 158 50.0
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.4e-35 154.1 234 39.7
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 5.3e-35 152.1 164 50.0
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 5.9e-34 148.7 90 82.2
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 1.3e-33 147.5 185 44.3
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 8.5e-33 144.8 181 45.3
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 1.1e-32 144.4 132 55.3
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 7.2e-32 141.7 206 43.7
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 3.9e-30 136.0 137 48.2
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 2.0e-29 133.7 197 39.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 2.0e-29 133.7 222 37.8
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.6e-29 133.3 131 48.9
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 7.4e-29 131.7 123 54.5
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 2.2e-28 130.2 133 48.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 4.8e-28 129.0 134 47.8
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 5.9e-26 122.1 327 31.5
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 7.7e-26 121.7 175 41.7
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 3.8e-25 119.4 157 40.8
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 8.5e-25 118.2 131 46.6
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 4.7e-23 112.5 159 42.1
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 8.8e-22 108.2 102 51.0
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 1.1e-21 107.8 166 38.0
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.6e-18 97.4 163 38.7
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.6e-18 96.7 126 45.2
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 4.8e-12 75.9 62 58.1
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 4.1e-11 72.8 58 60.3
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 5.3e-11 72.4 156 26.9
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 7.0e-11 72.0 179 28.5
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 1.6e-10 70.9 62 56.5
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 2.0e-10 70.5 158 26.6
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.0e-10 70.5 171 26.9
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 2.7e-10 70.1 122 38.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 2.7e-10 70.1 152 24.3
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 2.7e-10 70.1 82 45.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 3.5e-10 69.7 148 28.4
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 3.5e-10 69.7 158 25.9
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 7.7e-10 68.6 62 58.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.0e-09 68.2 145 28.3
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.0e-09 68.2 171 26.9
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.3e-09 67.8 145 28.3
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 2.2e-09 67.0 103 37.9
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 2.2e-09 67.0 149 26.2
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 2.9e-09 66.6 168 26.8
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 2.9e-09 66.6 144 26.4
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.9e-09 66.6 159 27.7
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.9e-09 66.6 145 27.6
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 5.0e-09 65.9 103 37.9
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 6.5e-09 65.5 144 27.8
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 8.5e-09 65.1 146 25.3
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 4.2e-08 62.8 43 69.8
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 5.5e-08 62.4 145 28.3
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 9.4e-08 61.6 145 26.2
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 2.7e-07 60.1 54 51.9
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 1.0e-06 58.2 52 55.8


User provided reference genes

Program Settings