Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.6e-104 382.9 203 100.0
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.8e-93 345.5 203 89.7
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 3.2e-89 332.0 204 86.8
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.6e-88 329.7 204 86.3
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.3e-87 325.9 202 83.7
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 7.5e-83 310.8 203 82.8
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.2e-82 309.3 204 80.9
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.2e-80 303.5 207 79.2
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.5e-78 295.8 205 80.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.1e-77 292.7 203 77.3
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 4.0e-76 288.5 203 75.4
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.0e-76 288.5 203 76.8
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 4.0e-76 288.5 203 76.4
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.5e-75 286.6 203 76.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.5e-75 286.6 203 76.8
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.5e-75 286.6 203 76.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.8e-75 284.6 203 76.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 7.5e-75 284.3 204 75.5
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 3.7e-74 282.0 203 75.4
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 3.7e-74 282.0 204 74.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 4.9e-74 281.6 207 75.4
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 8.3e-74 280.8 207 75.4
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-73 280.4 207 74.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.4e-73 280.0 204 76.5
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.9e-73 279.6 203 73.4
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.9e-73 279.6 210 73.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.4e-73 279.3 205 73.2
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 5.4e-73 278.1 202 73.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 5.4e-73 278.1 203 72.4
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.1e-73 277.7 203 74.9
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.6e-72 276.6 196 74.0
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.5e-72 275.4 237 67.1
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 4.6e-72 275.0 204 72.5
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 6.0e-72 274.6 203 73.9
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.0e-71 273.9 201 74.1
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.3e-71 273.5 205 73.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.9e-71 271.9 203 74.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 8.6e-71 270.8 203 70.4
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.1e-70 270.4 187 75.4
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 2.5e-70 269.2 203 73.9
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 9.5e-70 267.3 206 70.9
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 9.5e-70 267.3 209 72.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.1e-69 266.2 203 72.4
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.6e-69 265.4 202 70.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.7e-69 265.0 208 73.6
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.7e-69 265.0 208 73.6
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 6.2e-69 264.6 221 67.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.0e-68 261.9 203 71.4
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.0e-68 261.9 203 71.9
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.8e-68 261.2 203 70.0
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.2e-67 260.4 179 78.2
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.2e-67 260.4 179 78.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.5e-67 260.0 210 71.4
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.4e-67 258.8 204 70.6
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.7e-66 256.5 203 68.5
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.4e-65 252.7 179 75.4
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.2e-65 252.3 225 66.2
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.4e-65 251.5 173 76.3
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 9.2e-65 250.8 176 75.6
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.6e-64 250.0 203 68.5
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.3e-63 246.9 190 71.6
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-63 246.5 213 65.7
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.5e-62 243.4 149 84.6
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.3e-62 242.3 210 66.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.6e-62 241.5 147 84.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.6e-62 240.7 149 83.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.6e-61 240.0 149 82.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 2.1e-61 239.6 149 82.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.8e-61 239.2 150 82.0
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.8e-61 239.2 162 75.9
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.8e-61 239.2 197 68.0
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 4.7e-61 238.4 170 74.1
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.1e-60 237.3 149 81.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.8e-60 236.5 208 64.9
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.0e-60 235.3 213 63.4
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.0e-60 235.3 209 65.1
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 4.0e-60 235.3 149 81.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 4.0e-60 235.3 249 57.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 6.8e-60 234.6 149 79.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 6.8e-60 234.6 205 63.9
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.0e-59 233.0 205 65.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.6e-59 232.6 209 63.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 4.4e-59 231.9 214 62.1
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 9.9e-59 230.7 149 80.5
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.2e-58 229.6 213 62.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.9e-58 229.2 149 79.2
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 3.8e-58 228.8 176 70.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.4e-58 228.0 202 63.4
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.4e-57 226.9 185 65.9
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.9e-57 226.5 149 77.2
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.9e-57 226.5 149 76.5
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.9e-57 226.5 149 79.2
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 4.2e-57 225.3 242 57.9
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 5.4e-57 224.9 183 66.7
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 7.1e-57 224.6 204 63.7
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 9.3e-57 224.2 139 84.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.2e-56 223.8 162 72.8
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.2e-56 223.8 184 65.2
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.1e-56 223.0 183 67.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.7e-56 222.6 213 61.5
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.7e-56 222.6 162 72.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.7e-56 222.6 173 69.4
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.7e-56 222.6 173 69.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.5e-56 222.2 203 64.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 6.0e-56 221.5 147 76.9
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-55 220.3 162 71.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.3e-55 220.3 147 76.9
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.7e-55 219.9 149 77.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.3e-55 219.5 155 75.5
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.3e-55 219.5 147 74.8
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.9e-55 218.8 205 64.4
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 5.1e-55 218.4 204 64.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 5.1e-55 218.4 204 64.2
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 5.1e-55 218.4 147 77.6
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.7e-55 217.6 153 74.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.3e-54 215.7 149 77.9
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 3.3e-54 215.7 205 63.4
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 7.3e-54 214.5 203 59.1
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.6e-53 213.4 167 69.5
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.8e-53 212.6 179 65.4
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.6e-53 212.2 155 69.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.1e-52 210.7 159 70.4
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.1e-52 209.1 149 72.5
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 9.0e-52 207.6 179 63.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 9.0e-52 207.6 221 59.7
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 9.0e-52 207.6 221 59.7
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.5e-51 206.8 125 81.6
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 5.8e-51 204.9 138 76.1
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.6e-51 204.5 194 61.9
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.7e-50 203.4 184 62.0
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.8e-50 202.2 148 70.9
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.2e-49 198.7 202 57.4
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 7.1e-49 198.0 217 54.4
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 7.1e-49 198.0 221 57.5
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 7.9e-48 194.5 106 92.5
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.1e-46 190.7 158 65.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.9e-46 189.9 125 76.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 7.3e-46 188.0 147 69.4
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 4.8e-45 185.3 189 56.6
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 4.0e-44 182.2 161 65.8
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.6e-43 179.5 144 68.1
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 3.4e-43 179.1 198 52.5
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.2e-42 176.4 156 59.6
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-41 172.9 149 66.4
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 7.9e-40 167.9 150 60.7
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 7.4e-38 161.4 117 71.8
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-37 159.5 108 76.9
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-36 157.1 163 55.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 2.6e-35 152.9 94 84.0
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.0e-34 151.0 91 85.7
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 7.9e-32 141.4 82 84.1
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.1e-30 137.5 135 60.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 9.0e-28 127.9 108 66.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 8.4e-26 121.3 154 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.1e-20 104.4 98 54.1
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 2.2e-18 96.7 84 63.1
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 9.4e-17 91.3 171 33.9
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 2.1e-16 90.1 178 33.1
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 1.3e-13 80.9 102 51.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.3e-12 75.5 68 60.3
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 7.7e-11 71.6 77 53.2
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.2e-08 64.3 184 30.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.7e-08 63.2 53 62.3
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 6.7e-07 58.5 33 75.8


User provided reference genes

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