Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-149 532.3 269 100.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-144 516.5 268 97.8
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.9e-144 514.2 268 97.0
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-128 463.4 268 89.6
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.1e-124 450.3 269 83.3
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.9e-114 414.8 215 96.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.7e-104 382.5 271 71.2
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 3.0e-103 379.0 273 73.3
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 9.6e-102 374.0 268 70.9
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.1e-100 370.5 268 70.5
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.0e-100 368.6 206 91.3
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.2e-99 367.1 272 70.2
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.7e-98 363.2 272 69.9
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.2e-98 362.8 271 68.3
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.2e-96 357.1 272 68.8
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.8e-95 353.2 272 66.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 2.3e-95 352.8 272 69.1
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.3e-95 352.8 271 67.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 3.0e-95 352.4 272 65.8
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 3.9e-95 352.1 271 67.2
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 5.1e-95 351.7 271 66.4
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.5e-94 350.1 272 65.1
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.5e-94 350.1 273 65.9
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 3.3e-94 349.0 271 66.1
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 3.3e-94 349.0 271 66.4
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.3e-94 348.6 271 66.4
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 9.6e-94 347.4 275 68.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.6e-93 346.7 271 67.2
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.6e-93 346.7 273 65.9
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.8e-93 345.9 270 64.8
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 3.6e-93 345.5 271 65.7
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.1e-93 344.4 272 64.0
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-92 342.4 192 94.3
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 4.0e-92 342.0 271 64.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 5.3e-92 341.7 271 63.5
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 9.0e-92 340.9 270 67.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.0e-92 340.9 273 67.4
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.8e-91 338.2 279 67.0
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.7e-90 336.7 273 64.1
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 8.4e-90 334.3 275 63.6
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 8.4e-90 334.3 270 63.0
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.2e-89 332.4 271 63.8
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 9.3e-89 330.9 271 62.7
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 9.3e-89 330.9 272 61.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.1e-88 329.7 272 61.4
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.7e-88 329.3 272 62.9
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.7e-88 329.3 270 64.1
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.3e-87 327.0 272 65.8
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-87 326.6 275 64.7
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 2.3e-87 326.2 270 60.0
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.9e-87 325.5 271 62.7
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 8.7e-87 324.3 272 60.7
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.1e-86 323.9 272 61.0
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 9.6e-86 320.9 274 61.3
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 9.6e-86 320.9 274 61.3
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-85 320.5 274 60.9
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 1.3e-85 320.5 274 60.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.3e-85 320.5 270 61.5
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.6e-85 320.1 283 58.3
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 3.7e-85 318.9 215 78.6
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.4e-84 317.0 275 61.1
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 5.3e-84 315.1 270 62.6
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.5e-83 312.0 270 60.4
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 5.8e-83 311.6 271 58.7
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 5.8e-83 311.6 271 58.7
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.8e-83 311.6 259 62.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.9e-82 308.5 271 58.3
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 6.5e-82 308.1 258 66.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 8.4e-82 307.8 270 60.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 8.4e-82 307.8 243 68.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.4e-82 307.8 272 62.5
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.9e-81 306.6 271 60.5
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.5e-81 305.1 272 59.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 9.3e-81 304.3 272 59.2
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.6e-80 303.5 279 59.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 2.1e-80 303.1 275 58.5
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 6.0e-80 301.6 272 58.5
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.0e-79 300.8 276 59.1
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.0e-79 300.8 262 63.7
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 6.7e-79 298.1 271 56.1
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.9e-78 296.6 269 60.6
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.9e-78 296.6 280 58.2
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 3.3e-78 295.8 272 58.5
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 4.3e-78 295.4 267 58.1
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.4e-78 294.7 224 67.4
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.3e-77 293.9 279 59.1
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 3.7e-77 292.4 272 58.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.3e-76 288.5 272 58.1
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 9.0e-76 287.7 271 56.1
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.5e-75 287.0 272 54.8
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.7e-74 283.5 217 65.4
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.7e-74 283.5 235 61.3
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.2e-73 279.3 228 64.0
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 7.2e-73 278.1 289 55.4
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-71 274.2 218 66.5
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.5e-70 269.6 273 52.7
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 7.4e-70 268.1 271 57.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 4.8e-69 265.4 272 54.8
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.3e-69 265.0 249 63.9
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.9e-68 261.5 217 61.8
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.7e-66 256.9 278 54.0
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.8e-66 255.8 329 48.9
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 8.5e-66 254.6 215 60.0
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 6.7e-63 245.0 268 53.0
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 8.8e-63 244.6 218 60.6
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 3.1e-60 236.1 272 55.5
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 3.1e-60 236.1 222 56.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 5.3e-60 235.3 256 53.1
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 3.4e-59 232.6 142 81.0
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.9e-57 226.9 286 45.1
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.2e-57 226.1 122 89.3
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 7.2e-57 224.9 221 53.4
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-56 223.8 158 70.3
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.6e-56 223.8 269 49.1
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.8e-53 213.0 171 63.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.7e-53 212.6 224 50.9
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 3.8e-50 202.6 206 60.2
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.8e-50 202.6 270 42.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 6.7e-47 191.8 160 59.4
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.5e-46 188.3 114 78.1
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.7e-43 179.9 282 39.4
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.3e-42 177.6 270 41.1
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.6e-40 170.6 237 44.3
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-38 162.9 215 47.9
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-35 153.7 174 52.3
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.3e-34 151.0 110 63.6
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 8.0e-32 141.7 194 46.9
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.5e-30 137.5 153 51.0
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 8.3e-29 131.7 118 63.6
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 3.1e-28 129.8 122 52.5
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.8e-23 114.0 95 64.2
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 8.9e-23 111.7 70 70.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 3.5e-19 99.8 74 63.5
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 5.6e-17 92.4 253 28.9
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 4.0e-15 86.3 216 29.6
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 6.8e-15 85.5 219 31.5
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-10 70.5 62 61.3
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 6.2e-08 62.4 39 79.5


User provided reference genes

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