Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-280 968.0 495 100.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-276 955.3 495 99.0
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 6.5e-221 770.8 493 78.7
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.3e-207 724.5 418 90.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 4.2e-196 688.3 496 69.6
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.2e-190 670.2 494 70.6
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 6.5e-189 664.5 438 79.2
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.7e-187 659.1 488 69.7
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 2.7e-187 659.1 493 70.2
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 4.7e-187 658.3 490 70.0
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 4.1e-183 645.2 489 68.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 4.1e-183 645.2 510 64.9
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.6e-182 643.3 501 66.3
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.3e-181 639.4 493 65.3
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.1e-180 637.1 487 67.1
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-180 635.2 495 73.5
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 7.2e-180 634.4 496 65.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.2e-179 633.6 488 65.2
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.6e-179 633.3 503 65.8
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 3.6e-179 632.1 510 64.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 4.7e-179 631.7 492 66.9
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 4.0e-178 628.6 495 65.9
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.8e-178 627.5 491 64.4
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 9.8e-177 624.0 499 65.5
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.7e-176 623.2 489 64.6
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.7e-176 623.2 498 66.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 4.9e-176 621.7 498 64.1
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 8.3e-176 620.9 501 64.9
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.1e-175 620.5 491 63.7
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.4e-175 619.4 486 66.3
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.2e-174 617.1 494 63.4
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.9e-173 612.5 493 62.9
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.0e-173 611.7 496 61.5
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.3e-172 607.8 483 65.2
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 9.5e-172 607.4 512 61.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 9.5e-172 607.4 493 62.5
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 4.7e-171 605.1 496 62.7
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 6.1e-171 604.7 496 62.7
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.8e-170 603.2 498 62.0
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.3e-170 602.8 493 62.9
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 4.0e-170 602.1 489 65.2
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-169 599.7 495 62.2
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.0e-169 599.7 495 62.2
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 4.4e-169 598.6 484 64.5
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 9.8e-169 597.4 488 65.2
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.9e-168 595.9 490 63.1
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.8e-167 593.2 495 62.0
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 3.5e-166 589.0 507 61.3
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.6e-166 588.6 494 60.9
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.6e-166 588.6 494 60.9
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 5.9e-166 588.2 492 61.6
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 7.8e-166 587.8 488 63.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 3.9e-165 585.5 491 60.9
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 3.9e-165 585.5 491 62.3
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 5.0e-165 585.1 489 63.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.3e-164 582.4 442 68.1
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 5.6e-164 581.6 496 61.7
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.6e-164 581.6 489 61.6
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 9.5e-164 580.9 491 63.3
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 3.6e-163 578.9 498 61.0
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.6e-163 578.9 458 64.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.3e-162 576.2 486 63.6
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 4.0e-162 575.5 491 59.7
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 6.8e-162 574.7 496 61.9
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 6.8e-162 574.7 434 68.2
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 8.9e-162 574.3 503 59.4
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.3e-160 570.5 503 59.8
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.7e-160 570.1 493 59.8
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 3.7e-160 568.9 560 58.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 8.3e-160 567.8 493 62.5
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 8.3e-160 567.8 503 59.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.4e-159 567.0 486 62.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 2.4e-159 566.2 498 60.0
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.4e-159 565.1 490 61.4
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 5.0e-157 558.5 534 56.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.9e-156 556.6 505 59.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.6e-156 555.1 441 64.9
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 9.5e-156 554.3 504 59.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 3.6e-155 552.4 491 60.3
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.1e-154 550.8 486 62.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.3e-154 549.7 492 58.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 9.9e-153 544.3 484 59.5
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-152 542.3 506 60.7
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.8e-150 534.6 388 71.1
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 5.6e-148 528.5 435 63.7
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.4e-144 515.0 268 97.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 6.4e-144 515.0 437 60.6
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.1e-143 512.3 489 56.9
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 6.0e-142 508.4 483 58.0
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 3.9e-141 505.8 386 68.7
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-140 503.4 371 76.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 5.6e-140 501.9 491 56.6
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.6e-139 500.4 473 57.1
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 3.1e-138 496.1 436 58.5
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.3e-131 474.2 458 55.7
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.3e-131 474.2 479 54.9
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.1e-130 471.1 372 62.4
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.1e-124 451.1 351 67.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.7e-123 446.0 384 61.7
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 4.0e-122 442.6 392 58.2
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 4.5e-121 439.1 346 63.3
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 4.5e-113 412.5 437 51.3
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.8e-113 412.1 354 62.1
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-112 411.4 324 67.9
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 9.3e-111 404.8 498 45.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.6e-110 404.1 394 57.4
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.0e-110 402.1 216 94.0
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.0e-109 401.4 332 61.1
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.3e-109 401.0 487 50.1
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.8e-107 393.3 496 45.6
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.0e-104 384.8 492 48.2
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 6.5e-104 382.1 578 43.3
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.8e-101 374.0 335 60.0
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.3e-100 369.4 256 78.5
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-98 364.0 384 56.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.5e-97 360.9 491 44.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.8e-96 356.3 258 69.8
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 6.1e-94 349.0 287 62.0
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 3.7e-91 339.7 239 72.0
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.9e-87 327.4 345 55.4
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-84 317.4 166 93.4
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.0e-84 317.4 367 48.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.2e-83 313.9 230 68.3
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 4.5e-81 306.2 290 54.8
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-80 304.7 243 67.1
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 5.0e-80 302.8 246 61.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-76 290.0 361 49.6
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 4.1e-66 256.5 190 67.4
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-60 238.4 365 41.6
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.4e-60 236.5 211 56.9
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-59 233.8 272 54.8
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 1.4e-58 231.5 142 78.9
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.6e-55 219.5 175 63.4
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-53 215.3 414 38.2
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 3.4e-52 210.3 194 55.7
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 8.6e-48 195.7 206 58.7
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.5e-47 194.9 198 55.6
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 6.8e-45 186.0 504 31.5
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.8e-37 159.5 86 95.3
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.8e-36 156.4 176 48.9
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.1e-34 152.1 448 29.5
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.6e-33 148.3 145 52.4
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 3.3e-31 140.6 104 70.2
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.8e-29 134.8 156 48.7
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 8.9e-29 132.5 511 26.6
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-25 122.1 111 59.5
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-25 120.9 127 53.5
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.5e-25 120.6 119 59.7
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 7.8e-25 119.4 111 57.7
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-23 114.4 70 68.6
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 3.3e-23 114.0 95 64.2
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-20 102.8 80 66.2
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 2.7e-17 94.4 195 37.4
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-15 88.2 64 71.9
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 3.6e-14 84.0 89 44.9
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-13 81.6 84 54.8
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.8e-12 76.6 85 49.4
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-12 76.3 81 49.4
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 1.7e-11 75.1 54 59.3
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.1e-10 69.7 78 48.7
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 3.5e-09 67.4 132 37.1
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.1e-07 62.4 39 79.5


User provided reference genes

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