Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.2e-124 449.9 226 100.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.7e-113 412.1 225 88.9
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.9e-112 408.7 226 89.4
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.6e-110 402.9 226 88.1
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.9e-107 392.1 226 87.2
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.6e-102 376.3 226 81.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 7.5e-100 367.5 226 80.5
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 8.3e-99 364.0 226 81.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 3.2e-98 362.1 226 79.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 7.1e-98 360.9 226 80.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.1e-97 359.4 226 78.8
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.6e-97 358.2 226 77.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.3e-96 356.7 227 79.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.7e-96 356.3 229 78.6
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.1e-95 353.6 226 77.9
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.1e-95 353.6 226 77.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.3e-95 350.9 227 78.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.2e-94 350.1 229 77.3
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.8e-94 349.0 227 78.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.7e-94 348.2 227 78.9
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.1e-94 347.4 227 77.5
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-93 346.7 227 77.5
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.1e-93 345.5 227 78.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.2e-93 344.7 227 77.1
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 8.9e-93 344.0 227 77.5
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.3e-91 340.1 226 77.0
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.3e-91 340.1 229 74.7
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.7e-91 338.6 229 74.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 6.4e-91 337.8 228 71.5
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-90 337.0 228 71.9
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.1e-90 337.0 228 71.9
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.1e-90 337.0 226 75.2
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.4e-90 335.9 222 75.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 4.1e-90 335.1 230 74.8
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 5.4e-90 334.7 233 73.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 5.4e-90 334.7 227 74.9
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.6e-89 333.2 226 73.5
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.5e-89 332.0 229 73.8
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 6.6e-88 327.8 226 71.7
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-87 327.0 227 71.4
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.9e-87 326.2 230 73.0
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.6e-87 323.9 226 74.3
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.2e-86 323.6 226 74.8
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 8.1e-86 320.9 228 72.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.1e-85 320.5 233 71.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.2e-85 318.2 227 70.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.2e-84 317.0 230 68.7
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 5.8e-84 314.7 230 70.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 6.4e-83 311.2 231 70.6
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 8.4e-83 310.8 227 72.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-82 309.7 219 69.4
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 7.1e-82 307.8 231 68.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.6e-81 306.6 226 70.8
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.1e-81 306.2 226 69.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.6e-81 305.1 230 67.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.0e-80 303.9 232 67.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.0e-80 303.9 227 67.0
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 3.0e-80 302.4 230 68.3
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 4.3e-79 298.5 230 70.4
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 5.6e-79 298.1 227 68.3
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.6e-79 297.4 227 67.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 9.6e-79 297.4 227 68.3
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-78 296.2 226 66.8
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.8e-78 295.8 230 65.2
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.6e-78 295.4 221 67.0
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.8e-78 295.0 218 69.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.4e-77 293.5 226 68.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.4e-77 292.7 218 68.8
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 4.0e-77 292.0 236 65.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 6.9e-77 291.2 218 68.8
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.0e-76 289.7 227 67.4
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.6e-76 289.3 229 67.2
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.6e-76 289.3 228 68.4
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 9.9e-76 287.3 227 65.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.9e-76 287.3 166 83.7
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.3e-75 287.0 226 65.0
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.9e-75 285.8 226 65.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.9e-75 285.0 226 64.6
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-74 283.5 226 64.6
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.4e-74 282.7 226 64.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.2e-74 282.0 227 65.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 4.2e-74 282.0 223 66.4
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.1e-73 279.6 229 64.2
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.5e-73 278.9 229 62.4
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.6e-73 278.5 230 63.5
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.6e-73 278.5 229 63.8
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.7e-72 276.6 228 64.0
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.0e-72 275.8 228 62.3
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.9e-72 275.4 228 61.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.9e-71 273.1 233 62.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 5.6e-71 271.6 218 66.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.3e-71 271.2 243 59.3
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.1e-70 269.6 218 66.1
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 4.8e-70 268.5 221 61.1
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.2e-70 268.1 221 61.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.0e-68 263.1 221 59.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.5e-68 261.9 189 70.9
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 5.8e-68 261.5 226 63.7
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 5.8e-68 261.5 226 63.7
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 7.6e-68 261.2 221 60.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 7.6e-68 261.2 223 61.0
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 9.9e-68 260.8 227 60.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.7e-67 260.0 221 59.7
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.2e-67 259.6 220 61.4
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 4.9e-67 258.5 229 58.5
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-66 256.9 227 59.9
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.9e-66 256.5 258 58.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.2e-66 255.8 223 57.4
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 4.2e-66 255.4 227 59.5
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.2e-66 255.4 227 59.0
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 4.2e-66 255.4 227 59.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 2.7e-65 252.7 223 57.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.9e-65 251.1 228 61.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.0e-64 250.8 226 61.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.3e-64 250.4 226 58.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 3.0e-64 249.2 222 59.5
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.0e-64 249.2 227 59.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.9e-64 248.8 151 78.8
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 5.1e-64 248.4 227 59.0
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.7e-64 248.1 229 61.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.9e-63 246.5 227 58.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.3e-63 245.7 241 55.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.3e-63 245.4 227 59.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 4.3e-63 245.4 221 57.0
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.3e-62 243.8 186 66.7
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-62 243.8 217 59.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-61 240.7 227 58.1
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 6.9e-61 238.0 238 55.9
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 7.6e-60 234.6 203 60.1
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.0e-59 234.2 229 54.6
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 6.5e-59 231.5 249 53.0
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 6.5e-59 231.5 238 54.2
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.4e-59 231.1 228 56.6
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 9.3e-58 227.6 217 56.7
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.0e-56 224.2 210 57.6
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.9e-56 222.2 219 53.4
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 5.1e-56 221.9 214 54.7
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 6.7e-56 221.5 226 53.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.5e-55 220.3 221 52.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 3.3e-55 219.2 220 52.7
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 3.3e-55 219.2 227 53.3
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.3e-55 218.8 176 64.2
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.7e-54 215.7 225 51.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.1e-53 214.2 219 51.1
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.8e-53 213.4 219 50.2
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-52 210.7 221 51.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.5e-52 208.8 165 61.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.7e-51 206.8 228 56.1
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.7e-51 206.8 190 54.2
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-51 206.8 218 50.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 5.5e-50 201.8 164 67.1
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 7.2e-50 201.4 206 51.5
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.6e-49 200.3 208 51.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.6e-49 198.7 206 52.4
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.0e-48 197.6 148 62.2
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.3e-48 196.4 228 54.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.1e-48 195.3 279 45.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.5e-47 193.0 229 47.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.8e-46 188.7 211 50.7
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.3e-46 188.3 227 47.1
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.4e-45 187.2 152 58.6
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.2e-44 184.1 123 69.9
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.2e-43 179.9 226 44.2
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.0e-43 178.7 221 46.2
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.2e-42 176.0 170 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 5.5e-42 175.3 175 51.4
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 3.9e-40 169.1 106 68.9
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.5e-39 166.4 216 47.7
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-37 160.2 141 57.4
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 5.3e-37 158.7 232 44.8
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 5.3e-37 158.7 232 44.8
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 9.1e-37 157.9 227 44.9
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.0e-36 156.8 188 44.1
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.9e-34 150.2 98 74.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.4e-29 133.3 88 71.6
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.8e-24 117.1 116 57.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.4e-21 106.7 63 76.2
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.6e-17 92.8 54 74.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.0e-15 87.0 52 75.0
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 1.5e-07 60.8 135 37.0


User provided reference genes

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