Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 0.0e+00 1079.7 570 100.0
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 2.2e-257 892.1 570 83.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.9e-249 865.1 590 79.0
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 3.4e-234 815.1 604 75.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 5.2e-222 774.6 571 73.4
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.6e-221 772.3 565 73.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.3e-220 770.0 581 72.5
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 4.8e-220 768.1 579 70.3
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.4e-219 766.5 565 72.7
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.8e-219 766.1 579 72.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.2e-218 763.5 576 72.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 4.5e-218 761.5 580 71.4
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.3e-217 760.0 580 69.5
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.7e-217 759.6 579 71.8
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.8e-217 758.4 568 71.8
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 8.5e-217 757.3 558 71.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.1e-216 756.9 574 72.0
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.5e-216 755.7 574 72.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 4.2e-216 755.0 575 70.4
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.6e-215 751.9 560 73.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 3.6e-215 751.9 553 71.8
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.7e-215 751.5 560 72.9
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 8.0e-215 750.7 578 71.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.4e-214 750.0 559 71.4
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.0e-214 748.4 556 70.5
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.2e-213 746.9 558 70.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 4.4e-213 745.0 562 71.0
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 7.5e-213 744.2 578 69.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 7.5e-213 744.2 553 71.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-212 743.4 554 70.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 3.7e-212 741.9 554 70.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.3e-212 741.1 581 70.4
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.4e-211 740.0 598 67.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.8e-211 739.6 563 69.3
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.0e-211 737.6 575 69.0
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 8.5e-209 730.7 600 66.3
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-208 729.6 579 70.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 4.2e-208 728.4 559 68.7
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.2e-207 726.9 573 68.6
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 3.0e-206 722.2 582 67.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 4.4e-205 718.4 560 68.6
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 7.5e-205 717.6 577 65.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.8e-204 715.7 559 67.8
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 6.3e-204 714.5 560 67.0
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 5.4e-203 711.4 563 68.2
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 7.0e-203 711.1 563 68.2
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 7.0e-203 711.1 560 66.2
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.5e-202 708.8 532 68.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.5e-202 708.4 561 66.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.6e-199 699.9 589 64.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.4e-198 696.8 575 67.1
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.2e-197 693.7 570 66.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.0e-197 693.0 568 63.7
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.7e-196 688.7 576 63.9
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-195 686.4 493 72.2
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 7.0e-195 684.5 573 66.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 7.0e-195 684.5 574 64.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 3.5e-194 682.2 565 64.4
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 7.8e-194 681.0 582 62.7
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 8.6e-193 677.6 551 64.8
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.1e-192 677.2 560 64.6
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.1e-192 677.2 556 64.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.3e-192 675.6 569 63.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 7.3e-192 674.5 551 64.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 7.3e-192 674.5 554 66.1
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 3.6e-191 672.2 585 62.7
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 6.2e-191 671.4 581 62.7
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.2e-191 671.4 591 65.3
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 8.0e-191 671.0 554 64.1
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.8e-190 669.8 555 64.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.2e-190 668.3 565 62.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.2e-189 667.2 586 62.3
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-189 666.8 551 63.9
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.5e-189 666.8 551 63.9
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.5e-189 666.8 551 63.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 5.8e-189 664.8 555 63.4
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.5e-189 664.5 560 62.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.3e-188 663.7 583 61.9
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.2e-188 662.9 582 61.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 8.3e-188 661.0 559 61.0
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.1e-187 660.6 582 61.5
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.6e-186 656.8 565 63.7
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.7e-186 656.0 583 62.4
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 6.6e-185 651.4 562 61.6
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.9e-184 649.8 555 62.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 5.6e-184 648.3 573 61.4
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.1e-183 646.4 553 62.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 4.0e-182 642.1 553 62.2
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.9e-180 635.2 559 59.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.2e-178 630.6 564 60.8
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 5.1e-177 625.2 581 59.6
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.1e-176 624.0 569 57.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.9e-176 623.2 624 57.1
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 9.5e-176 620.9 452 72.1
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.9e-172 608.6 578 58.1
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 8.4e-172 607.8 567 56.4
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 6.0e-170 601.7 574 56.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 9.6e-168 594.3 572 58.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 8.1e-167 591.3 456 67.1
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 9.3e-163 577.8 567 55.9
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 6.6e-161 571.6 568 55.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.3e-156 557.4 560 55.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 9.3e-155 551.2 441 65.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 2.9e-148 529.6 579 52.2
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.2e-147 526.2 560 52.0
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.0e-145 519.6 456 60.1
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.5e-144 517.3 549 51.5
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.3e-140 504.2 425 63.1
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 3.8e-140 502.7 566 53.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 5.0e-132 475.7 567 46.9
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.6e-130 469.2 390 64.1
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.2e-127 460.3 392 65.1
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.6e-122 444.1 571 44.3
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.5e-117 427.6 538 47.6
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.6e-117 426.8 567 44.3
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.2e-116 423.7 319 67.1
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.8e-116 422.9 567 43.4
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.4e-115 421.0 565 41.9
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.6e-112 410.2 565 43.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 9.7e-112 408.3 346 61.6
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.4e-86 324.7 429 46.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 5.8e-72 276.2 259 57.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 3.0e-68 263.8 428 40.2
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.7e-66 256.5 213 65.7
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 4.1e-62 243.4 518 34.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.4e-57 227.6 367 41.4
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.8e-57 226.1 202 64.9
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.8e-56 223.0 159 72.3
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 3.2e-54 217.2 253 49.0
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-51 208.0 201 59.7
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.9e-51 208.0 520 32.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 2.9e-47 194.1 162 64.8
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-44 184.9 268 43.7
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-40 169.9 133 67.7
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 4.2e-38 163.7 187 52.9
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.4e-38 163.3 236 47.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.9e-31 141.0 150 51.3
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.4e-30 138.7 153 51.6
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.4e-30 138.7 603 25.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 4.5e-24 117.1 96 65.6
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.6e-24 116.3 116 57.8
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.1e-22 109.8 134 51.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-21 107.8 132 50.0
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.0e-21 106.7 132 51.5
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-19 102.1 141 48.2
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 9.7e-19 99.4 72 68.1
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.8e-17 95.1 78 65.4
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 4.1e-17 94.0 86 59.3
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.2e-16 92.4 88 54.5
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.5e-15 86.7 68 69.1
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.3e-14 82.8 66 68.2
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.8e-12 78.6 64 62.5
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.7e-12 76.6 67 62.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 8.2e-10 69.7 82 51.2
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 5.3e-09 67.0 104 47.1
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 6.9e-09 66.6 161 31.1
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.1e-06 59.3 54 51.9
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 1.1e-06 59.3 226 25.7
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.9e-06 58.5 51 64.7
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 2.5e-06 58.2 67 49.3
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 2.5e-06 58.2 65 49.2
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 2.5e-06 58.2 65 49.2


User provided reference genes

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