Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.7e-49 199.1 111 100.0
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.7e-31 138.3 113 79.6
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.5e-29 132.9 111 70.3
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.7e-28 129.4 111 68.5
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.4e-27 125.6 111 68.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.3e-27 123.6 111 75.7
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.2e-26 123.2 111 74.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.1e-26 122.5 112 72.3
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 2.7e-26 122.1 114 70.2
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 8.7e-25 117.1 112 65.2
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.3e-24 114.8 111 62.2
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.8e-23 112.1 110 60.0
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.7e-23 111.7 113 64.6
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.4e-22 109.8 111 62.2
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.4e-22 109.0 113 62.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 3.1e-22 108.6 111 59.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.0e-22 108.2 113 60.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.0e-22 108.2 113 60.2
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.3e-22 107.8 111 58.6
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 5.3e-22 107.8 112 58.9
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.2e-21 106.7 110 61.8
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 2.0e-21 105.9 111 62.2
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 2.6e-21 105.5 113 60.2
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 5.8e-21 104.4 114 61.4
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.8e-21 104.4 109 59.6
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 5.8e-21 104.4 111 57.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.0e-20 103.6 112 60.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.0e-20 103.6 111 59.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.2e-20 102.4 111 58.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.2e-20 102.4 109 57.8
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 4.9e-20 101.3 116 60.3
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 4.9e-20 101.3 113 60.2
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 6.5e-20 100.9 115 61.7
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.1e-19 100.1 117 61.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.4e-19 99.8 113 57.5
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.4e-19 99.8 111 55.9
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.9e-19 99.4 114 59.6
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 2.5e-19 99.0 110 55.5
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.5e-19 99.0 111 56.8
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.2e-19 98.6 111 65.8
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.2e-19 98.6 111 65.8
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 3.2e-19 98.6 115 57.4
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 5.5e-19 97.8 111 58.6
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 5.5e-19 97.8 109 56.0
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 7.1e-19 97.4 111 55.9
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 7.1e-19 97.4 110 59.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 9.3e-19 97.1 111 55.9
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 9.3e-19 97.1 112 58.9
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.2e-18 96.7 111 55.0
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.2e-18 96.7 111 55.0
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.2e-18 96.7 111 55.9
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.6e-18 96.3 111 54.1
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.7e-18 95.5 113 55.8
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 3.5e-18 95.1 112 58.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 4.6e-18 94.7 114 54.4
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.6e-18 94.7 99 55.6
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.0e-18 94.4 114 57.9
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.0e-18 94.4 109 64.2
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.9e-18 94.0 111 64.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 7.9e-18 94.0 114 57.9
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.0e-17 93.6 111 55.9
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-17 93.2 109 55.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-17 93.2 109 55.0
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.3e-17 93.2 113 59.3
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-17 93.2 111 53.2
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.3e-17 93.2 111 55.0
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.8e-17 92.8 111 53.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.8e-17 92.8 111 53.2
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.8e-17 92.8 111 57.7
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.3e-17 92.4 117 58.1
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 3.0e-17 92.0 113 55.8
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.9e-17 91.7 112 58.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.1e-17 91.3 114 52.6
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.1e-17 91.3 112 58.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.7e-17 90.5 114 58.8
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.5e-16 89.7 114 55.3
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 1.9e-16 89.4 112 55.4
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.9e-16 89.4 117 54.7
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.9e-16 89.4 113 51.3
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.9e-16 89.4 113 58.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.3e-16 88.6 110 55.5
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.3e-16 88.6 111 55.0
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 4.3e-16 88.2 114 49.1
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 7.4e-16 87.4 115 56.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 7.4e-16 87.4 112 53.6
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.3e-15 86.7 111 59.5
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.3e-15 86.7 117 53.8
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.6e-15 86.3 115 55.7
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-15 86.3 115 55.7
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.6e-15 86.3 115 55.7
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.6e-15 86.3 114 55.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 4.8e-15 84.7 110 56.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 4.8e-15 84.7 111 52.3
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 6.3e-15 84.3 110 54.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 6.3e-15 84.3 112 51.8
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.3e-15 84.3 117 53.8
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-14 83.6 111 54.1
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.4e-14 83.2 115 50.4
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.8e-14 82.8 111 49.5
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 55.5
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 55.5
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.8e-14 82.8 110 55.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.8e-14 82.8 113 47.8
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.4e-14 82.4 117 52.1
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.4e-14 82.4 112 50.0
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.4e-14 82.4 113 52.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.1e-14 82.0 110 55.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.1e-14 81.6 110 51.8
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-14 81.3 110 54.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.9e-14 80.9 113 51.3
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 6.9e-14 80.9 98 53.1
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 6.9e-14 80.9 111 51.4
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 6.9e-14 80.9 109 51.4
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 9.0e-14 80.5 108 50.0
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.2e-13 80.1 115 53.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.5e-13 79.7 107 51.4
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.5e-13 79.7 114 46.5
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.5e-13 79.7 114 46.5
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 2.0e-13 79.3 107 50.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 7.6e-13 77.4 110 53.6
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.0e-12 77.0 99 58.6
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.7e-12 76.3 111 55.0
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.7e-12 76.3 115 47.8
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 6.5e-12 74.3 115 49.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.5e-12 73.9 103 48.5
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 8.5e-12 73.9 114 51.8
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 110 49.1
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-11 73.6 110 49.1
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 91 51.6
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.1e-11 73.6 115 52.2
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.4e-11 73.2 112 48.2
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 3.2e-11 72.0 116 47.4
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 5.1e-09 64.7 99 50.5
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 8.8e-09 63.9 39 82.1
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-08 63.5 112 46.4
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 91 50.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 3.3e-08 62.0 110 46.4
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 3.3e-08 62.0 117 45.3
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 3.3e-08 62.0 41 75.6
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 7.4e-08 60.8 39 76.9
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 9.7e-08 60.5 103 50.5
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.8e-07 58.9 98 39.8
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.7e-07 58.5 38 78.9
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 8.2e-07 57.4 124 38.7
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.4e-06 56.6 96 50.0
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.4e-06 56.6 114 39.5
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.4e-06 56.6 111 42.3
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 1.8e-06 56.2 110 43.6
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 2.4e-06 55.8 122 42.6
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 2.4e-06 55.8 41 68.3
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.4e-06 55.8 122 38.5
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.1e-06 55.5 114 36.8
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 3.1e-06 55.5 122 37.7
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.1e-06 55.5 122 38.5
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 5.3e-06 54.7 124 38.7
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 6.9e-06 54.3 117 39.3
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 9.1e-06 53.9 110 42.7


User provided reference genes

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