Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.4e-184 648.7 314 100.0
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.0e-130 469.5 285 80.7
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 7.7e-127 457.6 294 74.5
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 2.0e-122 443.0 286 74.8
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.6e-122 442.6 285 73.7
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.4e-122 441.8 285 74.7
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.3e-121 440.3 287 72.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.2e-121 439.5 282 74.8
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.7e-121 438.7 286 73.8
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 8.2e-121 437.6 283 73.5
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.1e-120 437.2 286 73.1
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 3.1e-120 435.6 285 73.3
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 5.3e-120 434.9 285 73.0
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.2e-119 433.7 285 71.6
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.5e-119 431.8 285 72.6
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 4.5e-119 431.8 285 72.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.0e-118 430.6 311 67.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.3e-118 430.3 330 64.5
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.7e-118 429.9 286 73.8
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.9e-118 429.1 283 73.1
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.5e-117 426.0 287 71.8
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.5e-117 426.0 294 71.4
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 3.2e-117 425.6 282 72.0
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.5e-117 424.9 290 69.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.6e-116 423.3 264 76.5
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.6e-116 422.2 287 71.8
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.7e-116 421.8 313 66.1
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.1e-116 421.4 321 66.4
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.8e-115 419.9 301 69.1
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.3e-115 419.5 279 72.0
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 3.0e-115 419.1 265 75.5
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 5.2e-115 418.3 264 75.8
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.2e-114 417.2 320 64.1
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.2e-114 417.2 387 57.4
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 2.0e-114 416.4 277 72.2
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.0e-114 416.4 309 67.0
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.7e-113 413.3 261 72.8
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.7e-113 412.1 262 74.0
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.8e-113 411.8 305 67.2
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 8.3e-113 411.0 313 65.8
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.8e-112 409.8 281 69.4
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.8e-112 409.8 291 68.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.8e-112 409.8 309 65.7
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 2.4e-112 409.5 313 65.5
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 3.1e-112 409.1 335 63.0
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 7.0e-112 407.9 262 73.3
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.0e-112 407.9 265 73.2
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 7.0e-112 407.9 263 73.0
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.2e-111 407.1 248 81.5
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.2e-111 407.1 280 70.0
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.2e-111 407.1 262 72.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.0e-111 406.4 321 65.4
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 2.7e-111 406.0 330 61.2
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 3.5e-111 405.6 281 68.7
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 4.5e-111 405.2 262 72.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 5.9e-111 404.8 240 80.8
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.0e-110 404.1 260 72.3
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.0e-110 404.1 283 68.6
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.3e-110 403.7 281 68.3
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.7e-110 403.3 334 60.5
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.2e-110 402.9 277 69.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 2.9e-110 402.5 293 67.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.5e-110 401.4 256 72.7
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.1e-109 400.6 282 66.7
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.1e-109 400.6 258 72.9
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.5e-109 400.2 259 71.4
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.9e-109 399.8 256 71.9
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.2e-109 399.1 261 72.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 3.2e-109 399.1 257 73.2
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.2e-109 397.9 280 66.8
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.2e-108 397.1 309 65.0
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.1e-108 396.4 284 67.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 2.7e-108 396.0 262 69.1
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.6e-108 395.6 295 66.4
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.7e-108 395.2 256 71.5
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 8.0e-108 394.4 269 71.0
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.0e-107 394.0 282 67.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.4e-107 393.7 281 66.5
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.8e-107 393.3 314 62.4
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.3e-107 392.9 379 54.6
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 5.2e-107 391.7 282 66.7
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 6.8e-107 391.3 319 61.8
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 6.8e-107 391.3 261 70.9
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 8.8e-107 391.0 291 65.6
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 3.4e-106 389.0 284 66.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.4e-106 388.7 268 69.0
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 5.7e-106 388.3 325 61.2
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 5.7e-106 388.3 324 62.3
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 7.5e-106 387.9 257 70.8
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 4.9e-105 385.2 256 71.5
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 6.3e-105 384.8 294 63.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.1e-104 384.0 302 62.6
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.1e-104 384.0 283 67.5
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.4e-104 382.9 324 61.4
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 5.4e-104 381.7 268 68.3
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 9.1e-104 380.9 257 69.3
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.7e-103 379.4 286 65.0
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 3.5e-103 379.0 257 68.9
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 1.3e-102 377.1 240 75.4
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.9e-102 375.9 293 63.5
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.5e-101 373.6 283 64.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.6e-100 370.2 249 71.5
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.6e-100 369.0 257 68.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 4.7e-100 368.6 258 67.8
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 4.7e-100 368.6 264 66.3
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.0e-99 367.5 256 68.4
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-99 366.3 311 60.1
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 2.3e-99 366.3 307 61.6
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 8.9e-99 364.4 280 64.6
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 4.4e-98 362.1 290 62.4
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 5.7e-98 361.7 331 58.0
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 9.5e-93 344.4 337 54.3
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 8.9e-91 337.8 275 61.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.7e-89 333.6 300 58.0
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 3.1e-83 312.8 202 72.3
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 9.8e-82 307.8 212 69.3
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.4e-80 303.9 184 78.3
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.2e-80 302.8 311 51.4
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.7e-79 299.7 309 48.5
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.7e-78 297.0 303 50.8
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.2e-74 284.3 177 79.7
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.3e-73 280.8 230 62.2
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 2.1e-71 273.5 229 56.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 7.3e-69 265.0 278 49.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.2e-68 264.2 306 49.0
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.8e-68 263.1 282 51.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 7.6e-66 255.0 172 71.5
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 7.6e-66 255.0 172 71.5
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 6.4e-65 251.9 194 64.9
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.1e-64 251.1 172 69.8
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.2e-64 249.6 216 61.6
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-63 247.7 194 62.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 7.8e-63 245.0 279 48.0
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.9e-61 240.4 222 59.9
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.8e-57 226.1 175 67.4
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 8.4e-57 224.9 171 68.4
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-56 224.6 298 44.6
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.6e-52 210.7 191 55.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-51 208.0 274 44.5
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.3e-51 205.7 234 46.2
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.2e-50 204.5 251 42.6
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 2.2e-49 200.3 217 52.1
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.9e-48 197.2 181 56.9
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.8e-43 180.6 149 56.4
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.2e-42 177.9 221 41.2
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.1e-36 157.1 233 42.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 2.0e-34 150.6 84 75.0
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 3.4e-34 149.8 196 41.8
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 1.9e-32 144.1 198 43.9
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 8.7e-30 135.2 88 67.0
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 8.7e-30 135.2 88 67.0
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-29 134.0 81 71.6
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 3.2e-16 90.1 50 76.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 3.2e-16 90.1 50 76.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 3.3e-13 80.1 54 68.5


User provided reference genes

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