Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 5.2e-243 844.0 427 100.0
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 2.6e-202 708.8 423 83.7
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.1e-200 703.4 423 83.2
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 9.3e-200 700.3 479 76.2
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.2e-199 699.9 424 82.3
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 3.0e-198 695.3 423 82.7
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 4.3e-197 691.4 426 81.2
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.8e-196 688.0 424 81.1
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 4.0e-195 684.9 431 79.6
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 6.9e-195 684.1 409 82.9
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.5e-194 682.9 426 80.3
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 3.4e-194 681.8 418 82.3
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 5.8e-194 681.0 408 84.6
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 7.6e-194 680.6 406 81.8
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.9e-193 678.7 424 80.2
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 6.4e-193 677.6 427 79.4
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 4.2e-192 674.9 433 77.8
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.1e-192 674.1 432 78.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 7.1e-192 674.1 402 83.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.6e-191 672.9 402 83.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.7e-191 672.2 432 77.8
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.0e-190 670.2 427 79.4
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.3e-190 669.1 409 80.9
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 5.1e-190 667.9 425 78.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.9e-189 666.0 409 80.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.3e-189 665.2 436 77.3
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 9.6e-189 663.7 409 80.9
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 9.6e-189 663.7 392 82.7
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.1e-188 662.5 433 76.2
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.1e-188 662.5 392 82.4
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 6.2e-188 661.0 426 78.2
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.4e-187 659.8 407 80.8
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.1e-187 658.7 434 76.0
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.5e-186 656.4 411 79.1
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 2.2e-185 652.5 462 72.1
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 3.8e-185 651.7 392 82.4
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 8.4e-185 650.6 394 81.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.1e-184 650.2 419 76.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.4e-184 649.8 392 81.6
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.9e-184 649.4 418 75.6
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.2e-184 648.7 414 77.3
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 4.2e-184 648.3 431 74.9
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 9.3e-184 647.1 419 78.5
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-183 646.7 420 77.6
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.2e-183 646.7 416 77.4
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 2.1e-183 646.0 392 79.8
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.5e-183 645.2 412 78.6
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 6.0e-183 644.4 426 75.1
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 6.0e-183 644.4 392 80.9
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.0e-182 643.7 425 76.0
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.8e-182 642.9 392 78.8
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.5e-181 639.0 416 76.2
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.3e-180 636.7 392 78.3
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.8e-180 634.8 402 77.6
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.8e-180 634.8 398 76.1
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 8.2e-180 634.0 418 75.1
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.8e-179 632.9 405 77.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 5.3e-179 631.3 426 75.1
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 6.9e-179 630.9 417 74.3
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 6.9e-179 630.9 417 74.1
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.9e-179 630.9 398 77.9
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.5e-178 629.8 390 77.9
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 3.4e-178 628.6 430 72.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 3.4e-178 628.6 418 74.6
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.3e-177 626.7 424 71.9
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.3e-177 626.7 418 74.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.2e-177 625.9 424 71.7
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.9e-177 625.5 415 74.7
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.8e-177 625.2 417 74.1
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.9e-176 622.9 392 77.3
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.3e-174 616.7 395 75.7
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.8e-174 616.3 373 81.2
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.9e-173 612.8 424 71.5
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.9e-173 612.8 390 76.7
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.5e-173 612.5 424 71.5
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.3e-173 612.1 425 71.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 8.2e-172 607.4 424 70.8
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 8.2e-172 607.4 424 70.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 3.1e-171 605.5 407 74.7
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.6e-170 602.4 397 72.8
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.6e-170 602.4 577 59.1
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.2e-169 599.4 386 78.8
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.1e-168 597.0 392 76.5
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.4e-168 596.7 394 71.8
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 5.5e-168 594.7 407 76.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.3e-163 578.2 402 70.4
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 9.1e-163 577.4 451 67.8
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.6e-162 575.9 346 81.5
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.6e-162 575.9 405 72.3
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 8.5e-161 570.9 346 79.8
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.1e-157 560.5 346 78.9
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.1e-157 560.5 331 82.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.7e-156 556.6 391 70.3
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.7e-151 539.3 344 73.5
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 4.8e-148 528.5 382 70.4
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.4e-147 526.9 418 66.3
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 4.1e-147 525.4 401 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 7.0e-147 524.6 396 64.9
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.6e-146 523.5 379 66.0
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 7.7e-146 521.2 338 74.3
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.6e-143 512.3 383 64.5
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.2e-140 503.1 297 84.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 8.5e-137 491.1 351 75.2
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 5.7e-133 478.4 373 66.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.4e-131 473.0 334 69.5
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.1e-123 447.6 322 71.1
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 4.3e-120 435.6 369 56.4
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.0e-114 416.8 262 77.9
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.6e-113 411.4 266 77.1
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 8.9e-110 401.4 277 70.4
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 8.3e-108 394.8 359 59.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.5e-106 389.4 344 59.3
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.4e-99 367.5 409 48.2
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 3.2e-99 366.3 228 77.6
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.6e-93 346.7 406 47.3
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 9.9e-93 344.7 399 46.9
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.2e-68 263.8 170 72.4
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 9.6e-64 248.4 230 60.0
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.8e-63 246.9 267 49.8
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.1e-58 229.2 129 86.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 7.4e-56 222.2 166 69.9
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.6e-53 213.8 122 84.4
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.6e-53 213.8 339 36.0
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 3.0e-49 200.3 143 69.2
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-48 195.7 167 58.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.8e-39 167.2 139 64.7
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.8e-30 137.9 418 31.3
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.8e-30 137.9 101 74.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 7.2e-27 125.9 84 71.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.6e-26 123.6 95 65.3
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.8e-25 121.3 99 69.7
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.2e-19 99.4 64 67.2
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.3e-15 85.9 68 60.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 7.0e-14 82.8 71 62.0
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 7.7e-13 79.3 49 71.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.9e-12 77.4 62 61.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 3.6e-10 70.5 63 52.4
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.9e-07 60.8 44 59.1
CBR_g3871 Chara braunii HOM05D005532 ORTHO05D006873 2.4e-06 57.8 102 34.3
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 7.0e-06 56.2 48 56.2


User provided reference genes

Program Settings