Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.0e-48 196.8 132 100.0
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.8e-45 186.0 131 93.1
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.2e-42 174.9 131 84.0
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 6.1e-33 144.4 131 76.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.0e-32 143.7 131 77.1
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 3.9e-32 141.7 136 70.6
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.9e-31 139.4 132 82.6
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 4.8e-22 108.2 136 57.4
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.2e-22 107.5 149 47.7
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 8.2e-22 107.5 149 47.7
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.4e-21 106.7 148 49.3
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.1e-21 105.1 133 51.1
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.2e-20 103.6 151 52.3
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.2e-20 103.6 151 47.7
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.2e-20 103.6 151 47.7
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.5e-20 103.2 140 61.4
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 2.0e-20 102.8 137 49.6
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.0e-20 102.8 133 52.6
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 4.5e-20 101.7 136 52.2
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.3e-19 100.1 137 51.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.2e-19 99.4 67 76.1
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.8e-19 98.6 135 48.9
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 5.0e-19 98.2 138 60.1
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 8.5e-19 97.4 133 55.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.1e-18 97.1 70 68.6
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.1e-18 97.1 142 65.5
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.4e-18 96.7 140 65.7
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.4e-18 96.7 141 53.2
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.5e-18 95.9 67 71.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.5e-18 94.7 133 55.6
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.7e-17 92.4 68 72.1
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.0e-16 90.5 77 67.5
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.4e-16 90.1 71 64.8
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.4e-16 90.1 67 67.2
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.0e-16 89.0 68 69.1
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.1e-15 87.0 69 65.2
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.5e-15 86.7 72 61.1
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.5e-15 86.7 68 67.6
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.3e-15 85.5 67 65.7
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 4.4e-15 85.1 67 65.7
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 5.7e-15 84.7 131 42.0
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 7.4e-15 84.3 67 61.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 7.4e-15 84.3 69 66.7
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 7.4e-15 84.3 132 42.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.7e-14 83.2 67 70.1
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.7e-14 83.2 137 43.8
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 2.2e-14 82.8 71 67.6
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 2.8e-14 82.4 67 64.2
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.8e-14 82.4 135 44.4
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 2.8e-14 82.4 68 67.6
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 2.8e-14 82.4 67 64.2
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.8e-14 82.4 70 64.3
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 3.7e-14 82.0 76 63.2
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 3.7e-14 82.0 71 66.2
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.8e-14 81.6 77 61.0
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 6.3e-14 81.3 74 62.2
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 8.2e-14 80.9 143 42.0
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 8.2e-14 80.9 67 62.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-13 80.5 74 62.2
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-13 80.5 74 62.2
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-13 80.5 78 57.7
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.1e-13 80.5 76 57.9
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.1e-13 80.5 77 62.3
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.4e-13 80.1 133 45.1
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-13 80.1 74 62.2
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-13 80.1 74 62.2
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-13 80.1 74 62.2
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.4e-13 80.1 74 62.2
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-13 80.1 74 62.2
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.4e-13 80.1 147 41.5
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.8e-13 79.7 137 42.3
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.8e-13 79.7 70 62.9
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 2.4e-13 79.3 67 62.7
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.4e-13 79.3 76 57.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-13 79.3 74 60.8
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-13 79.3 74 60.8
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.4e-13 79.3 76 60.5
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 3.1e-13 79.0 70 64.3
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 4.1e-13 78.6 132 41.7
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 4.1e-13 78.6 81 54.3
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 5.3e-13 78.2 72 61.1
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 5.3e-13 78.2 78 59.0
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 7.0e-13 77.8 74 56.8
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 7.0e-13 77.8 69 62.3
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 9.1e-13 77.4 72 62.5
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.2e-12 77.0 65 61.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.6e-12 76.6 70 60.0
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.6e-12 76.6 72 62.5
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.6e-12 76.6 74 59.5
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.0e-12 76.3 64 65.6
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 2.0e-12 76.3 131 50.4
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.6e-12 75.9 129 45.7
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.6e-12 75.9 83 53.0
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 3.5e-12 75.5 75 58.7
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-12 75.5 75 58.7
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-12 75.5 75 58.7
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 3.5e-12 75.5 75 58.7
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 3.5e-12 75.5 75 58.7
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.5e-12 75.5 71 56.3
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 4.5e-12 75.1 71 59.2
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 5.9e-12 74.7 133 39.8
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 5.9e-12 74.7 76 56.6
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 5.9e-12 74.7 146 37.7
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 5.9e-12 74.7 146 37.7
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.9e-12 74.7 67 59.7
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 7.7e-12 74.3 137 43.8
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 7.7e-12 74.3 137 43.8
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 7.7e-12 74.3 65 63.1
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.0e-11 73.9 65 60.0
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.3e-11 73.6 145 37.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-11 73.6 74 59.5
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-11 73.6 145 37.9
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.3e-11 73.6 145 37.9
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.3e-11 73.6 67 58.2
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.3e-11 73.6 81 51.9
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.7e-11 73.2 81 51.9
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.7e-11 73.2 81 51.9
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 2.9e-11 72.4 137 43.1
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 2.9e-11 72.4 137 43.1
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 2.9e-11 72.4 77 55.8
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.8e-11 72.0 72 54.2
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 5.0e-11 71.6 63 60.3
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 6.5e-11 71.2 75 56.0
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.1e-10 70.5 131 39.7
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.5e-10 69.3 64 62.5
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 7.2e-10 67.8 66 60.6
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.7e-09 65.9 64 56.2
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 6.1e-09 64.7 66 56.1
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 6.1e-09 64.7 68 60.3
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 8.0e-09 64.3 72 52.8
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 8.0e-09 64.3 142 38.0
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.8e-08 63.2 74 52.7
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.8e-08 63.2 75 48.0
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 2.3e-08 62.8 81 51.9
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.0e-08 62.4 64 54.7
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 5.2e-08 61.6 79 51.9
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.2e-08 61.6 75 49.3
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 5.7e-07 58.2 82 47.6
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 9.7e-07 57.4 75 52.0
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.3e-06 57.0 74 44.6


User provided reference genes

Program Settings