Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 1.0e-224 783.1 394 100.0
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.7e-84 316.6 395 53.7
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 5.0e-83 312.4 405 51.6
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 1.5e-71 274.2 409 48.4
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 6.6e-67 258.8 415 43.9
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 1.1e-61 241.5 402 43.3
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 1.1e-56 224.9 403 40.7
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 5.8e-55 219.2 405 39.5
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 3.3e-50 203.4 395 39.0
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 5.6e-50 202.6 395 39.0
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 5.6e-50 202.6 395 39.0
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 1.1e-48 198.4 375 40.8
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 2.4e-48 197.2 414 39.4
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 6.8e-48 195.7 394 37.3
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 7.6e-47 192.2 401 37.9
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 9.2e-45 185.3 430 34.4
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 9.2e-45 185.3 374 39.3
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 2.1e-44 184.1 403 38.0
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 4.6e-44 183.0 348 42.2
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 6.0e-44 182.6 394 37.3
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 2.3e-43 180.6 408 37.7
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 5.1e-43 179.5 348 40.5
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 4.3e-42 176.4 324 43.2
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 6.2e-41 172.6 360 39.7
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 8.1e-41 172.2 383 39.4
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 2.4e-40 170.6 390 36.2
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 7.6e-39 165.6 425 34.4
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 7.6e-39 165.6 408 35.3
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.3e-38 164.9 374 36.9
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 2.2e-38 164.1 398 33.4
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 8.4e-38 162.2 399 35.1
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.9e-37 161.0 274 42.7
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 2.4e-37 160.6 404 36.4
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 4.2e-37 159.8 406 36.7
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 5.4e-37 159.5 343 39.4
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.6e-36 157.9 396 34.6
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 4.6e-36 156.4 425 34.4
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 8.7e-35 152.1 400 34.0
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 1.1e-34 151.8 397 34.5
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 1.1e-34 151.8 390 35.1
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.5e-34 151.4 404 33.9
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.5e-34 151.4 404 33.7
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 3.3e-34 150.2 400 34.0
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 9.6e-34 148.7 425 33.6
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 5.8e-31 139.4 329 36.8
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 5.8e-31 139.4 405 34.3
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.7e-30 137.9 400 32.2
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 3.8e-30 136.7 410 34.4
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 1.4e-29 134.8 410 34.1
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 1.9e-29 134.4 400 32.2
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 5.4e-29 132.9 393 32.3
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 8.7e-27 125.6 270 38.5
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 1.5e-26 124.8 289 37.0
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 1.9e-26 124.4 270 38.5
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 2.5e-26 124.0 314 35.7
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 2.5e-26 124.0 381 33.1
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 3.3e-26 123.6 393 32.1
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 5.6e-26 122.9 216 43.1
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 3.7e-25 120.2 393 32.1
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 2.4e-24 117.5 414 30.9
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 6.9e-24 115.9 393 31.0
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 1.2e-23 115.2 396 31.1
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 1.2e-23 115.2 401 31.2
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 4.5e-23 113.2 386 32.4
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 1.3e-22 111.7 391 30.4
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 4.9e-22 109.8 208 40.9
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 6.4e-22 109.4 208 40.4
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.4e-21 108.2 207 42.0
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 1.9e-21 107.8 407 30.2
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.5e-21 107.5 396 29.0
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 2.7e-20 104.0 394 30.2
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 6.0e-20 102.8 175 43.4
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 3.0e-19 100.5 387 27.1
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 1.4e-16 91.7 219 35.2
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 2.0e-15 87.8 210 37.6
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 5.8e-15 86.3 198 35.9
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.8e-11 74.7 90 47.8
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 8.7e-11 72.4 114 42.1
BolC3t15576H Brassica oleracea HOM05D001841 ORTHO05D001767 1.5e-10 71.6 214 33.2
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 2.5e-10 70.9 211 32.7
C03p32340 Brassica napus HOM05D001841 ORTHO05D001767 4.3e-10 70.1 214 33.2
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 4.3e-10 70.1 231 29.9
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 2.2e-09 67.8 215 33.5
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 3.7e-09 67.0 211 32.7
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 3.7e-09 67.0 211 33.2
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 6.3e-09 66.2 211 32.2
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 6.3e-09 66.2 213 32.9
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 8.2e-09 65.9 384 26.0
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 8.2e-09 65.9 166 35.5
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.1e-08 65.5 221 31.7
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.4e-08 65.1 147 34.0
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.4e-08 64.3 214 30.8
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 2.4e-08 64.3 208 33.7
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 9.0e-08 62.4 217 29.5
CDE06G1867 Ceratophyllum demersum HOM05D000370 ORTHO05D001366 1.2e-07 62.0 398 25.6
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 4.5e-07 60.1 224 29.0
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 5.9e-07 59.7 119 40.3
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 7.7e-07 59.3 327 28.7
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 1.0e-06 58.9 246 30.1
SEGI_11594 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 1.0e-06 58.9 454 24.4
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 1.3e-06 58.5 248 31.0
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 1.3e-06 58.5 229 28.4
Actinidia00458 Actinidia chinensis HOM05D001841 ORTHO05D001767 1.7e-06 58.2 207 30.4
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 2.9e-06 57.4 407 23.3
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 3.8e-06 57.0 218 29.4
Oeu013688.1 Olea europaea HOM05D001841 ORTHO05D001767 5.0e-06 56.6 101 39.6
AL3G47510 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 6.5e-06 56.2 123 33.3


User provided reference genes

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