Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.5e-83 312.8 159 100.0
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.3e-49 197.6 143 76.9
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 6.2e-32 141.4 127 65.4
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.4e-31 140.2 127 64.6
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 5.2e-31 138.3 154 57.1
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 5.2e-31 138.3 154 57.1
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 2.0e-30 136.3 142 59.2
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.3e-29 133.7 141 58.9
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.3e-29 133.7 149 57.0
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.7e-29 133.3 143 58.7
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.2e-29 132.9 129 56.6
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.9e-28 129.8 145 55.9
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.9e-28 129.8 129 55.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.9e-28 129.8 141 56.7
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 2.4e-28 129.4 143 58.0
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 4.1e-28 128.6 147 53.1
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.2e-27 127.1 147 55.8
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.2e-27 127.1 128 55.5
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.2e-27 127.1 126 57.1
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.6e-27 126.7 144 55.6
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 2.1e-27 126.3 141 54.6
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.7e-27 125.9 143 55.9
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 3.5e-27 125.6 126 57.9
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.3e-26 123.6 131 56.5
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.7e-26 123.2 141 54.6
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 1.7e-26 123.2 141 55.3
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 3.9e-26 122.1 144 53.5
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 3.9e-26 122.1 136 51.5
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.1e-25 120.6 141 53.9
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.1e-25 120.6 148 53.4
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.1e-25 120.6 143 55.2
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.5e-25 120.2 143 52.4
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 1.9e-25 119.8 145 53.8
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 2.5e-25 119.4 129 51.9
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 7.3e-25 117.9 123 57.7
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 9.6e-25 117.5 136 48.5
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 9.6e-25 117.5 143 51.0
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.2e-24 117.1 145 51.0
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-24 116.7 146 53.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.6e-24 116.7 142 53.5
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 4.7e-24 115.2 144 51.4
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 6.2e-24 114.8 146 54.1
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.1e-23 114.0 128 52.3
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 1.1e-23 114.0 145 47.6
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.4e-23 113.6 127 52.8
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 2.4e-23 112.8 124 51.6
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.4e-23 112.8 144 52.1
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 3.1e-23 112.5 151 49.7
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.1e-23 112.5 128 51.6
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.1e-23 112.5 165 47.9
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 4.0e-23 112.1 115 53.9
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 5.2e-23 111.7 139 48.2
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 8.9e-23 110.9 129 48.8
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 8.9e-23 110.9 127 53.5
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 2.6e-22 109.4 126 52.4
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 2.6e-22 109.4 151 49.0
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 4.4e-22 108.6 116 52.6
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 4.4e-22 108.6 146 49.3
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 5.8e-22 108.2 143 44.8
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 7.6e-22 107.8 127 52.8
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 7.6e-22 107.8 132 52.3
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 7.6e-22 107.8 126 50.8
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.2e-21 106.3 137 48.2
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 4.9e-21 105.1 133 50.4
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 4.9e-21 105.1 116 50.9
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 4.9e-21 105.1 127 50.4
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 6.4e-21 104.8 132 50.0
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 8.4e-21 104.4 140 50.0
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 8.4e-21 104.4 116 52.6
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 8.4e-21 104.4 138 48.6
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.1e-20 104.0 128 48.4
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.4e-20 103.6 131 49.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.9e-20 103.2 110 53.6
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.9e-20 103.2 104 52.9
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.4e-20 102.8 125 48.0
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 3.2e-20 102.4 150 47.3
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 3.2e-20 102.4 126 50.8
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 3.2e-20 102.4 149 44.3
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 4.2e-20 102.1 156 41.0
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 5.4e-20 101.7 153 46.4
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 5.4e-20 101.7 136 46.3
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.2e-19 100.5 129 50.4
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.6e-19 100.1 139 47.5
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.6e-19 100.1 126 49.2
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.6e-19 100.1 126 49.2
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.1e-19 99.8 125 46.4
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 2.7e-19 99.4 145 48.3
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 7.8e-19 97.8 126 49.2
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 7.8e-19 97.8 144 47.2
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 7.8e-19 97.8 118 47.5
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.3e-18 97.1 96 56.2
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.3e-18 97.1 129 48.1
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.7e-18 96.7 137 45.3
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 2.3e-18 96.3 114 50.9
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.3e-18 96.3 126 49.2
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 5.1e-18 95.1 139 46.8
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 5.1e-18 95.1 163 42.9
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 5.1e-18 95.1 139 48.9
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 5.1e-18 95.1 128 48.4
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 8.7e-18 94.4 139 48.2
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 8.7e-18 94.4 144 45.8
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.1e-17 94.0 130 44.6
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.9e-17 93.2 136 46.3
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.9e-17 93.2 119 46.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 1.9e-17 93.2 133 45.1
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 4.3e-17 92.0 154 42.9
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 4.3e-17 92.0 154 42.9
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 5.6e-17 91.7 106 48.1
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 7.3e-17 91.3 105 51.4
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.6e-17 90.9 141 46.1
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 9.6e-17 90.9 131 46.6
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 9.6e-17 90.9 153 41.8
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 9.6e-17 90.9 153 41.8
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 9.6e-17 90.9 153 41.8
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 9.6e-17 90.9 153 41.8
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 9.6e-17 90.9 153 41.8
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 9.6e-17 90.9 105 50.5
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.6e-16 90.1 153 41.8
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 8.1e-16 87.8 135 45.9
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.1e-15 87.4 128 50.8
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 3.1e-15 85.9 140 45.7
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.3e-15 85.1 137 43.8
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.0e-15 84.3 137 43.1
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 9.9e-14 80.9 86 53.5
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 9.9e-14 80.9 138 43.5
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 2.9e-13 79.3 140 39.3
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 6.4e-13 78.2 116 40.5
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 4.2e-12 75.5 122 44.3
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 6.0e-11 71.6 114 49.1
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 7.9e-11 71.2 105 47.6
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.7e-10 70.1 144 38.9
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 4.3e-09 65.5 146 37.0
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 5.6e-09 65.1 90 45.6
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.6e-08 63.5 107 44.9
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 4.5e-06 55.5 108 44.4


User provided reference genes

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