Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.0e-93 344.0 177 100.0
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 8.3e-62 240.7 176 72.7
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.9e-58 229.6 189 68.8
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.9e-58 229.6 189 68.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 5.8e-55 218.0 157 75.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 9.9e-55 217.2 155 76.1
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.3e-50 202.2 143 76.9
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 8.1e-49 197.6 177 60.5
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-47 193.4 178 61.2
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 2.6e-47 192.6 176 60.8
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 5.8e-47 191.4 165 64.8
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 7.6e-47 191.0 159 66.0
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.3e-46 190.3 162 65.4
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 2.9e-46 189.1 178 60.1
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 4.9e-46 188.3 162 62.3
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 6.4e-46 188.0 157 65.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 8.4e-46 187.6 181 59.1
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 8.4e-46 187.6 176 58.0
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 5.4e-45 184.9 178 56.7
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 7.1e-45 184.5 181 58.6
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 7.8e-44 181.0 164 57.9
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.3e-43 180.3 180 58.3
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.7e-43 179.9 179 56.4
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 3.0e-43 179.1 176 57.4
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 3.0e-43 179.1 163 61.3
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.0e-43 179.1 181 55.8
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 3.0e-43 179.1 175 57.7
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 5.1e-43 178.3 179 55.3
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 5.1e-43 178.3 177 58.2
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 6.6e-43 177.9 175 57.1
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 6.6e-43 177.9 185 57.3
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 8.7e-43 177.6 135 70.4
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.5e-42 176.8 174 56.3
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 5.6e-42 174.9 174 58.6
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 7.3e-42 174.5 202 52.0
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 7.3e-42 174.5 142 64.1
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.3e-41 173.7 147 61.9
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.6e-41 172.2 180 56.7
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 8.1e-41 171.0 163 58.9
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-40 170.2 149 63.8
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.8e-40 169.9 141 61.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 3.1e-40 169.1 147 59.2
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 3.1e-40 169.1 182 54.9
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 6.9e-40 167.9 177 57.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.5e-39 166.8 160 56.9
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.3e-38 163.7 158 61.4
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.7e-38 163.3 162 58.0
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 2.2e-38 162.9 154 55.8
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.2e-38 162.9 165 57.6
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.2e-38 162.9 169 55.0
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 6.4e-38 161.4 171 53.8
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 6.4e-38 161.4 137 59.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-37 160.6 204 50.0
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.1e-37 160.6 155 56.8
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.4e-37 160.2 141 60.3
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.9e-37 159.8 169 51.5
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 5.4e-37 158.3 179 50.3
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 9.3e-37 157.5 162 58.0
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 9.3e-37 157.5 162 52.5
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.2e-36 157.1 162 53.7
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.6e-36 156.8 163 55.2
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 7.9e-36 154.5 147 54.4
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.3e-35 153.7 153 54.9
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.7e-35 153.3 149 54.4
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 2.3e-35 152.9 121 62.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.3e-35 152.9 144 54.2
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 3.9e-35 152.1 131 58.0
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 3.9e-35 152.1 145 55.9
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 6.6e-35 151.4 107 72.0
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 8.7e-35 151.0 172 50.0
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 8.7e-35 151.0 158 53.8
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 8.7e-35 151.0 166 52.4
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 8.7e-35 151.0 166 52.4
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.1e-34 150.6 144 57.6
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 2.5e-34 149.4 164 53.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 1.3e-33 147.1 179 50.3
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 8.1e-33 144.4 151 51.7
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 8.1e-33 144.4 159 51.6
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 1.4e-32 143.7 176 47.2
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.4e-32 143.7 133 56.4
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 3.1e-32 142.5 125 60.8
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 4.0e-32 142.1 124 59.7
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 5.3e-32 141.7 172 47.7
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.2e-31 140.6 162 50.0
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.5e-31 140.2 130 55.4
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.5e-31 140.2 164 50.0
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.5e-31 140.2 131 54.2
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.4e-31 139.0 154 51.3
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 3.4e-31 139.0 146 52.1
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 3.4e-31 139.0 175 48.0
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 3.4e-31 139.0 146 52.1
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 7.6e-31 137.9 170 48.8
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 9.9e-31 137.5 180 47.8
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.7e-30 136.7 158 50.6
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 2.2e-30 136.3 178 46.6
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 2.2e-30 136.3 162 48.1
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 3.8e-30 135.6 157 51.6
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 4.9e-30 135.2 152 51.3
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 4.9e-30 135.2 156 51.3
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 1.4e-29 133.7 139 54.7
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 1.9e-29 133.3 165 47.9
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 2.4e-29 132.9 146 50.7
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 3.2e-29 132.5 155 48.4
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 3.2e-29 132.5 155 48.4
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 3.2e-29 132.5 155 48.4
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 3.2e-29 132.5 155 48.4
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 3.2e-29 132.5 155 48.4
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.4e-29 131.7 152 50.7
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 5.4e-29 131.7 169 48.5
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 5.4e-29 131.7 129 52.7
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-29 131.7 155 48.4
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 9.3e-29 131.0 103 63.1
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.2e-28 130.6 169 46.7
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.2e-28 130.6 152 51.3
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 1.6e-28 130.2 154 51.3
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.6e-28 130.2 155 47.7
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.5e-28 129.0 145 53.1
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.5e-28 129.0 143 52.4
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-26 123.6 159 49.1
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 2.5e-26 122.9 156 47.4
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 2.8e-25 119.4 161 43.5
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.8e-24 116.7 153 45.8
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.8e-24 116.7 178 42.1
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.4e-24 116.3 127 52.0
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 4.5e-23 112.1 139 48.2
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 4.5e-23 112.1 102 57.8
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 7.6e-23 111.3 184 45.1
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 4.9e-22 108.6 179 41.9
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.1e-18 97.4 178 38.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 9.6e-18 94.4 91 60.4
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 6.2e-17 91.7 128 43.8
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 9.0e-16 87.8 160 38.8
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.5e-15 87.0 120 48.3
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 1.1e-13 80.9 138 37.0
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 4.2e-13 79.0 91 49.5
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.6e-12 77.0 156 35.9
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 2.7e-12 76.3 101 45.5
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.1e-12 75.1 127 37.8
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 4.3e-10 68.9 190 33.7
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 4.3e-10 68.9 152 32.2
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 3.4e-07 59.3 41 61.0
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 7.7e-07 58.2 42 59.5
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 3.8e-06 55.8 83 44.6


User provided reference genes

Program Settings