Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G145500 Carya illinoinensis HOM05D008543 ORTHO05D000630 9.8e-253 876.3 443 100.0
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 3.2e-30 137.1 496 30.8
CiPaw.13G145600 Carya illinoinensis HOM05D019813 ORTHO05D000630 3.7e-26 123.6 466 31.3
Rhsim06G0235100 Rhododendron simsii HOM05D000174 ORTHO05D000630 2.1e-21 107.8 371 30.2
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 2.0e-19 101.3 396 27.8
CSS0016853 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 6.4e-18 96.3 503 27.0
Cc05_g15710 Coffea canephora HOM05D000174 ORTHO05D000630 6.4e-18 96.3 459 25.9
Glyma.13G073300 Glycine max HOM05D022580 ORTHO05D000630 3.2e-17 94.0 511 26.0
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 5.4e-17 93.2 474 27.6
Duzib150G0090 Durio zibethinus HOM05D008543 ORTHO05D000630 5.4e-17 93.2 450 27.6
Oeu025932.1 Olea europaea HOM05D011325 ORTHO05D000630 1.6e-16 91.7 364 27.2
Thecc.09G250700 Theobroma cacao HOM05D008543 ORTHO05D000630 1.6e-16 91.7 452 27.4
CSS0041839 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 4.6e-16 90.1 486 27.0
CAN.G1085.7 Capsicum annuum HOM05D000174 ORTHO05D000630 5.9e-16 89.7 482 23.9
PGR119G0147 Punica granatum HOM05D000174 ORTHO05D000630 1.7e-15 88.2 353 27.2
Nitab4.5_0009408g0010 Nicotiana tabacum HOM05D008543 ORTHO05D000630 2.3e-15 87.8 412 27.7
GSVIVG01014844001 Vitis vinifera HOM05D000174 ORTHO05D000630 2.3e-15 87.8 458 28.8
Lalb_Chr15g0080221 Lupinus albus HOM05D008543 ORTHO05D000630 5.0e-15 86.7 453 25.8
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 5.0e-15 86.7 541 25.3
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 5.0e-15 86.7 376 26.9
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 6.6e-15 86.3 392 27.3
Cc01_g06930 Coffea canephora HOM05D000174 ORTHO05D000630 8.6e-15 85.9 490 24.9
Nitab4.5_0000152g0060 Nicotiana tabacum HOM05D008543 ORTHO05D000630 2.5e-14 84.3 420 26.4
Oeu006263.1 Olea europaea HOM05D008543 ORTHO05D000630 2.5e-14 84.3 425 28.0
Oeu052885.1 Olea europaea HOM05D008543 ORTHO05D000630 3.3e-14 84.0 371 27.0
Prupe.6G093500 Prunus persica HOM05D025829 ORTHO05D000630 5.6e-14 83.2 116 42.2
MD03G1110900 Malus domestica HOM05D025829 ORTHO05D000630 9.5e-14 82.4 111 40.5
Oeu032035.1 Olea europaea HOM05D011325 ORTHO05D000630 9.5e-14 82.4 339 28.0
HanXRQChr03g0079361 Helianthus annuus HOM05D000174 ORTHO05D000630 1.2e-13 82.0 442 26.0
Glyma.20G047500 Glycine max HOM05D022580 ORTHO05D000630 1.6e-13 81.6 460 24.6
TAR627G0908 Trochodendron aralioides HOM05D000174 ORTHO05D000630 1.6e-13 81.6 278 29.1
QL07p014639 Quercus lobata HOM05D008543 ORTHO05D000630 2.8e-13 80.9 429 26.3
Lalb_Chr17g0347691 Lupinus albus HOM05D008543 ORTHO05D000630 3.6e-13 80.5 195 29.7
VMungo0540G2495 Vigna mungo HOM05D022580 ORTHO05D000630 3.6e-13 80.5 428 26.2
Peaxi162Scf00234g00042 Petunia axillaris HOM05D000174 ORTHO05D000630 6.2e-13 79.7 473 24.1
Duzib168G2176 Durio zibethinus HOM05D008543 ORTHO05D000630 8.0e-13 79.3 463 26.3
Duzib170G0186 Durio zibethinus HOM05D008543 ORTHO05D000630 8.0e-13 79.3 444 25.2
FAN25G3117 Fragaria x ananassa HOM05D000174 ORTHO05D000630 8.0e-13 79.3 358 28.5
QL08p000516 Quercus lobata HOM05D000174 ORTHO05D000630 8.0e-13 79.3 393 27.7
BcaB08g35982 Brassica carinata HOM05D000174 ORTHO05D000630 1.0e-12 79.0 159 33.3
Phvul.006G020000 Phaseolus vulgaris HOM05D022580 ORTHO05D000630 1.0e-12 79.0 499 24.8
DCAR_017611 Daucus carota HOM05D000174 ORTHO05D000630 1.4e-12 78.6 157 31.8
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 1.4e-12 78.6 362 26.2
Gorai.001G133100 Gossypium raimondii HOM05D008543 ORTHO05D000630 3.1e-12 77.4 215 32.1
RcHm_v2.0_Chr5g0074621 Rosa chinensis HOM05D000174 ORTHO05D000630 3.1e-12 77.4 496 27.4
CARHR269600 Cardamine hirsuta HOM05D000174 ORTHO05D000630 5.2e-12 76.6 438 25.6
Migut.N02396 Erythranthe guttata HOM05D000174 ORTHO05D000630 6.8e-12 76.3 96 42.7
HanXRQChr13g0409261 Helianthus annuus HOM05D000174 ORTHO05D000630 6.8e-12 76.3 468 25.0
MD11G1124800 Malus domestica HOM05D025829 ORTHO05D000630 6.8e-12 76.3 87 44.8
Aqoxy4G02266 Aquilegia oxysepala HOM05D000174 ORTHO05D000630 8.9e-12 75.9 383 25.1
arahy.Tifrunner.gnm1.ann1.1FA9DV Arachis hypogaea HOM05D008543 ORTHO05D000630 8.9e-12 75.9 397 22.9
FAN21G0599 Fragaria x ananassa HOM05D000174 ORTHO05D000630 8.9e-12 75.9 361 29.1
Gohir.D07G123350 Gossypium hirsutum HOM05D008543 ORTHO05D000630 8.9e-12 75.9 215 31.6
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 8.9e-12 75.9 91 41.8
Ciclev10007805m.g Citrus clementina HOM05D000174 ORTHO05D000630 1.2e-11 75.5 101 40.6
Gohir.A07G119050 Gossypium hirsutum HOM05D008543 ORTHO05D000630 1.2e-11 75.5 215 30.7
AL8G31830 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 1.5e-11 75.1 433 24.9
CiPaw.09G162000 Carya illinoinensis HOM05D000174 ORTHO05D000630 1.5e-11 75.1 407 23.6
Ca_12245_v3 Cicer arietinum L. HOM05D027424 ORTHO05D017834 2.0e-11 74.7 175 32.0
CiPaw.12G142600 Carya illinoinensis HOM05D000174 ORTHO05D000630 2.6e-11 74.3 384 25.3
Thhalv10015446m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 2.6e-11 74.3 88 42.0
FvH4_3g41600 Fragaria vesca HOM05D000174 ORTHO05D000630 2.6e-11 74.3 361 27.4
CAN.G623.74 Capsicum annuum HOM05D008543 ORTHO05D000630 3.4e-11 73.9 100 41.0
Eucgr.F03645 Eucalyptus grandis HOM05D008543 ORTHO05D000630 3.4e-11 73.9 373 25.2
MBI14_g12738_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 3.4e-11 73.9 288 29.5
Oeu032036.1 Olea europaea HOM05D011325 ORTHO05D000630 3.4e-11 73.9 121 33.9
AT5G56200 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 5.8e-11 73.2 92 41.3
Sopen10g025660 Solanum pennellii HOM05D011325 ORTHO05D000630 5.8e-11 73.2 129 34.9
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 5.8e-11 73.2 100 42.0
arahy.Tifrunner.gnm1.ann1.YK7I6N Arachis hypogaea HOM05D008543 ORTHO05D000630 7.5e-11 72.8 360 23.9
C09p47440 Brassica napus HOM05D000174 ORTHO05D000630 7.5e-11 72.8 87 43.7
CANSAT54G2384 Cannabis sativa HOM05D008543 ORTHO05D000630 9.8e-11 72.4 409 23.2
Cpa.g.sc12.67 Carica papaya HOM05D000174 ORTHO05D000630 9.8e-11 72.4 430 24.0
Gohir.A08G009700 Gossypium hirsutum HOM05D008543 ORTHO05D000630 9.8e-11 72.4 166 31.3
Peaxi162Scf00232g00062 Petunia axillaris HOM05D008543 ORTHO05D000630 9.8e-11 72.4 438 25.8
FAN11G0349 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.3e-10 72.0 360 27.8
Sp6g18050 Schrenkiella parvula HOM05D000174 ORTHO05D000630 1.3e-10 72.0 102 40.2
SGA_v2.0_scaffold79G25559 Striga asiatica HOM05D011325 ORTHO05D000630 1.3e-10 72.0 369 25.2
BcaC04g20137 Brassica carinata HOM05D000174 ORTHO05D000630 1.7e-10 71.6 99 40.4
BolC9t57599H Brassica oleracea HOM05D000174 ORTHO05D000630 1.7e-10 71.6 99 40.4
Lj8C183G11 Lonicera japonica HOM05D000174 ORTHO05D000630 1.7e-10 71.6 291 26.8
ATR1128G018 Amborella trichopoda HOM05D010587 ORTHO05D001526 2.2e-10 71.2 287 25.8
Gohir.D08G019750 Gossypium hirsutum HOM05D008543 ORTHO05D000630 2.2e-10 71.2 166 30.7
Gorai.004G014300 Gossypium raimondii HOM05D008543 ORTHO05D000630 2.9e-10 70.9 162 30.9
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 2.9e-10 70.9 393 25.7
Oeu052027.2 Olea europaea HOM05D000784 ORTHO05D000116 2.9e-10 70.9 96 37.5
CSS0027724 Camellia sinensis var. sinensis HOM05D008543 ORTHO05D000630 4.9e-10 70.1 143 35.7
Sopen10g026890 Solanum pennellii HOM05D011325 ORTHO05D000630 4.9e-10 70.1 120 34.2
ATR0730G014 Amborella trichopoda HOM05D010587 ORTHO05D000630 6.4e-10 69.7 302 26.5
A10p13430 Brassica napus HOM05D000174 ORTHO05D000630 6.4e-10 69.7 99 39.4
BraA10t43446Z Brassica rapa HOM05D000174 ORTHO05D000630 6.4e-10 69.7 99 39.4
Cfa010152 Carpinus fangiana HOM05D019813 ORTHO05D000630 6.4e-10 69.7 445 25.4
EL10Ac4g10054 Beta vulgaris HOM05D008543 ORTHO05D000630 8.3e-10 69.3 101 37.6
PSO675G1550 Papaver somniferum HOM05D000174 ORTHO05D000630 8.3e-10 69.3 89 40.4
BolC4t23958H Brassica oleracea HOM05D012084 ORTHO05D000630 1.1e-09 68.9 123 33.3
Nitab4.5_0003570g0030 Nicotiana tabacum HOM05D008543 ORTHO05D000630 1.1e-09 68.9 93 40.9
THA.LOC104811702 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 1.1e-09 68.9 423 25.3
Atru.chr2.3896 Acer truncatum HOM05D000174 ORTHO05D000630 1.4e-09 68.6 347 27.4
Nn1g07630 Nelumbo nucifera HOM05D000174 ORTHO05D000630 1.4e-09 68.6 383 26.9
Carub.0003s1290 Capsella rubella HOM05D012084 ORTHO05D000630 2.4e-09 67.8 130 32.3
Carub.0008s1652 Capsella rubella HOM05D000174 ORTHO05D000630 2.4e-09 67.8 434 23.7
BcaB02g10056 Brassica carinata HOM05D012084 ORTHO05D000630 3.2e-09 67.4 111 34.2
ATR0751G124 Amborella trichopoda HOM05D010587 ORTHO05D001526 4.1e-09 67.0 107 38.3
Actinidia10593 Actinidia chinensis HOM05D000174 ORTHO05D000630 5.4e-09 66.6 405 24.2
A07p17920 Brassica napus HOM05D012084 ORTHO05D000630 5.4e-09 66.6 110 36.4
BraA07t29510Z Brassica rapa HOM05D012084 ORTHO05D000630 5.4e-09 66.6 110 36.4
CDE03G0095 Ceratophyllum demersum HOM05D056667 ORTHO05D000630 5.4e-09 66.6 427 24.1
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 5.4e-09 66.6 495 25.7
CiPaw.14G107600 Carya illinoinensis HOM05D019813 ORTHO05D000630 7.0e-09 66.2 391 25.3
Ca_12258_v3 Cicer arietinum L. HOM05D027424 ORTHO05D022364 7.0e-09 66.2 173 28.9
PSO541G5961 Papaver somniferum HOM05D000174 ORTHO05D000630 7.0e-09 66.2 83 42.2
AL4G20180 Arabidopsis lyrata HOM05D012084 ORTHO05D000630 9.2e-09 65.9 106 38.7
Nn1g07631 Nelumbo nucifera HOM05D000174 ORTHO05D000630 9.2e-09 65.9 335 25.7
BcaC02g10848 Brassica carinata HOM05D012084 ORTHO05D000630 1.2e-08 65.5 127 34.6
C04p24550 Brassica napus HOM05D012084 ORTHO05D000630 1.2e-08 65.5 127 34.6
Manes.01G176050 Manihot esculenta HOM05D049795 ORTHO05D000630 1.2e-08 65.5 350 27.1
Sc16g0010820 Simmondsia chinensis HOM05D008543 ORTHO05D000630 1.2e-08 65.5 364 24.5
ATR0874G001 Amborella trichopoda HOM05D010587 ORTHO05D000630 1.6e-08 65.1 102 34.3
ATR1101G089 Amborella trichopoda HOM05D010587 ORTHO05D000630 1.6e-08 65.1 102 35.3
CiPaw.11G210700 Carya illinoinensis HOM05D000174 ORTHO05D000630 1.6e-08 65.1 488 24.8
MBI15_g44395_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 1.6e-08 65.1 387 26.1
CARHR119210 Cardamine hirsuta HOM05D012084 ORTHO05D000630 2.0e-08 64.7 142 35.2
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 2.0e-08 64.7 520 23.5
Peaxi162Scf00051g00034 Petunia axillaris HOM05D000174 ORTHO05D001526 2.0e-08 64.7 54 57.4
Sopen11g029860 Solanum pennellii HOM05D000174 ORTHO05D000630 2.0e-08 64.7 437 22.0
Thhalv10002171m.g Eutrema salsugineum HOM05D012084 ORTHO05D000630 2.7e-08 64.3 105 38.1
AT2G26940 Arabidopsis thaliana HOM05D012084 ORTHO05D000630 3.5e-08 63.9 106 34.0
BcaB01g03035 Brassica carinata HOM05D012084 ORTHO05D000630 3.5e-08 63.9 186 29.0
Phvul.003G273600 Phaseolus vulgaris HOM05D008543 ORTHO05D000630 6.0e-08 63.2 155 35.5
Actinidia23303 Actinidia chinensis HOM05D000174 ORTHO05D000630 7.8e-08 62.8 256 27.7
SGA_v2.0_scaffold11G05961 Striga asiatica HOM05D010587 ORTHO05D000630 7.8e-08 62.8 115 33.0
FAN16G0761 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.0e-07 62.4 456 25.2
ATR0069G047 Amborella trichopoda HOM05D010587 ORTHO05D000630 1.3e-07 62.0 39 61.5
CARHR119110 Cardamine hirsuta HOM05D012084 ORTHO05D000630 1.3e-07 62.0 121 33.1
Cfa016961 Carpinus fangiana HOM05D000174 ORTHO05D000630 1.3e-07 62.0 93 38.7
Solyc11g072210.1 Solanum lycopersicum HOM05D000174 ORTHO05D000630 1.3e-07 62.0 450 22.4
Migut.M01582 Erythranthe guttata HOM05D008543 ORTHO05D000630 1.7e-07 61.6 105 33.3
Lalb_Chr09g0334661 Lupinus albus HOM05D010587 ORTHO05D000630 1.7e-07 61.6 43 53.5
Oeu062484.1 Olea europaea HOM05D001658 ORTHO05D001406 2.3e-07 61.2 369 24.4
Sabra16G0133300 Salix brachista HOM05D008543 ORTHO05D000630 2.3e-07 61.2 490 25.1
COL.COLO4_33268 Corchorus olitorius HOM05D008543 ORTHO05D000630 3.0e-07 60.8 297 26.6
PGSC0003DMG400034376 Solanum tuberosum HOM05D000174 ORTHO05D000630 3.0e-07 60.8 487 22.6
Oeu032037.1 Olea europaea HOM05D011325 ORTHO05D000630 3.9e-07 60.5 132 32.6
Sp4g08400 Schrenkiella parvula HOM05D012084 ORTHO05D000630 3.9e-07 60.5 105 37.1
TPR.G11948 Trifolium pratense HOM05D008543 ORTHO05D000630 3.9e-07 60.5 108 31.5
ATR1101G107 Amborella trichopoda HOM05D010587 ORTHO05D001526 5.0e-07 60.1 50 46.0
SGA_v2.0_scaffold79G25561 Striga asiatica HOM05D011325 ORTHO05D000630 5.0e-07 60.1 81 35.8
THA.LOC104827413 Tarenaya hassleriana HOM05D012084 ORTHO05D000630 5.0e-07 60.1 112 33.0
ATR1101G093 Amborella trichopoda HOM05D010587 ORTHO05D000630 8.6e-07 59.3 39 56.4
Haze_09916 Corylus avellana HOM05D000174 ORTHO05D000630 1.1e-06 58.9 512 23.8
Oeu025931.1 Olea europaea HOM05D011325 ORTHO05D000630 1.1e-06 58.9 117 32.5
TWI75G0649 Tripterygium wilfordii HOM05D008543 ORTHO05D000630 1.5e-06 58.5 217 29.0
C02p61560 Brassica napus HOM05D010116 ORTHO05D012794 2.5e-06 57.8 114 31.6
BraA02t09104Z Brassica rapa HOM05D010116 ORTHO05D012794 2.5e-06 57.8 114 31.6
Rhsim04G0007800 Rhododendron simsii HOM05D000174 ORTHO05D000630 2.5e-06 57.8 454 26.9
THA.LOC104817725 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 2.5e-06 57.8 417 22.3
unitig_899.g15615 Utricularia gibba HOM05D000174 ORTHO05D001526 2.5e-06 57.8 57 47.4
SEGI_02862 Sequoiadendron giganteum HOM05D000174 ORTHO05D001526 3.3e-06 57.4 360 21.9
Thhalv10023020m.g Eutrema salsugineum HOM05D000174 ORTHO05D001526 4.3e-06 57.0 54 50.0
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 5.6e-06 56.6 54 53.7
GSVIVG01037363001 Vitis vinifera HOM05D000174 ORTHO05D001526 5.6e-06 56.6 40 55.0
ATR1128G063 Amborella trichopoda HOM05D010587 ORTHO05D000630 7.3e-06 56.2 141 28.4
MELO3C014059.2 Cucumis melo HOM05D014059 ORTHO05D001526 7.3e-06 56.2 34 55.9
Peaxi162Scf00106g00091 Petunia axillaris HOM05D001658 ORTHO05D001406 7.3e-06 56.2 359 22.3
Pp3c18_22010 Physcomitrium patens HOM05D000174 ORTHO05D001526 7.3e-06 56.2 35 60.0
Zm00001eb375650 Zea mays HOM05D000174 ORTHO05D001106 7.3e-06 56.2 88 35.2
AT2G17180 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 9.5e-06 55.8 38 60.5
BcaC03g18087 Brassica carinata HOM05D010116 ORTHO05D012794 9.5e-06 55.8 90 32.2
BolC2t12210H Brassica oleracea HOM05D010116 ORTHO05D012794 9.5e-06 55.8 90 32.2
DCAR_013757 Daucus carota HOM05D000174 ORTHO05D000630 9.5e-06 55.8 98 34.7
Lj1C901G3 Lonicera japonica HOM05D000174 ORTHO05D000630 9.5e-06 55.8 425 23.3
Lj5P172T80 Lonicera japonica HOM05D000174 ORTHO05D001526 9.5e-06 55.8 56 48.2
Nitab4.5_0000633g0100 Nicotiana tabacum HOM05D000174 ORTHO05D001526 9.5e-06 55.8 45 55.6
Pp3c19_21390 Physcomitrium patens HOM05D000174 ORTHO05D001526 9.5e-06 55.8 144 28.5


User provided reference genes

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