Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 3.9e-134 481.5 244 100.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.3e-118 429.9 243 88.5
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.4e-115 419.1 244 85.2
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 9.9e-114 413.7 244 84.0
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 1.3e-108 396.7 244 79.9
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-104 383.6 240 78.8
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.4e-104 382.5 243 74.1
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 4.2e-104 381.7 244 76.6
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 7.1e-104 380.9 243 73.7
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 7.1e-104 380.9 240 78.3
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.6e-103 379.8 240 79.2
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 4.6e-103 378.3 236 76.7
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.8e-102 376.3 244 76.2
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.0e-102 375.6 244 74.2
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.1e-102 374.8 243 73.3
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 6.7e-102 374.4 244 73.8
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 8.7e-102 374.0 244 75.0
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.1e-101 373.6 244 74.6
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 5.6e-101 371.3 235 77.4
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.3e-100 370.2 244 73.4
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.6e-100 369.8 233 77.3
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 8.1e-100 367.5 233 75.5
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 8.1e-100 367.5 240 73.8
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 8.1e-100 367.5 244 72.5
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.1e-99 367.1 244 73.4
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.8e-99 366.3 240 73.3
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.8e-99 366.3 244 73.0
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 1.8e-99 366.3 242 73.1
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.4e-99 365.9 244 72.5
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 3.1e-99 365.5 227 78.9
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.0e-99 365.2 234 78.2
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 4.0e-99 365.2 240 74.6
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 5.3e-99 364.8 240 73.8
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 5.3e-99 364.8 240 74.6
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 6.9e-99 364.4 242 72.7
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 9.0e-99 364.0 240 74.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 72.1
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 72.5
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.6e-98 362.5 244 72.1
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 4.5e-98 361.7 232 74.1
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 4.5e-98 361.7 244 73.4
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 5.8e-98 361.3 244 73.8
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 2.2e-97 359.4 229 75.5
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 3.8e-97 358.6 233 73.0
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 4.9e-97 358.2 222 77.0
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 4.9e-97 358.2 227 76.2
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 6.4e-97 357.8 227 76.7
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 8.4e-97 357.5 227 77.5
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 8.4e-97 357.5 229 76.4
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 2.4e-96 355.9 232 72.8
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 4.2e-96 355.1 232 72.8
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 4.2e-96 355.1 244 73.0
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.6e-95 353.2 228 73.7
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 6.0e-95 351.3 228 72.4
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.3e-94 350.1 227 73.1
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 3.9e-94 348.6 228 71.9
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.9e-94 348.6 240 69.6
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 8.7e-94 347.4 226 72.6
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.1e-93 347.1 244 69.7
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.9e-93 346.3 226 72.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 2.5e-93 345.9 240 70.0
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.5e-93 345.9 228 76.3
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 5.6e-93 344.7 224 73.2
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 5.6e-93 344.7 232 73.3
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 5.6e-93 344.7 244 68.0
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 7.4e-93 344.4 239 69.0
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 7.4e-93 344.4 239 69.0
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-93 344.4 240 69.6
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-93 344.4 240 69.6
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 9.6e-93 344.0 224 73.2
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 9.6e-93 344.0 224 73.2
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 9.6e-93 344.0 224 73.2
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 1.3e-92 343.6 244 68.9
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.3e-92 343.6 276 65.2
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.6e-92 343.2 222 74.3
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.1e-92 342.8 226 71.2
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.8e-92 342.4 240 67.5
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 7.6e-90 334.3 224 71.0
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.0e-89 334.0 241 67.2
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.3e-89 333.6 210 76.2
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.2e-89 332.8 236 68.2
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.2e-89 332.8 277 65.3
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 2.9e-89 332.4 250 66.4
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 8.4e-89 330.9 224 71.9
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.0e-86 323.9 245 65.7
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 2.3e-86 322.8 227 66.1
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.8e-83 313.2 195 80.5
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 2.4e-83 312.8 211 71.1
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 2.0e-82 309.7 227 66.1
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.7e-81 306.6 222 65.3
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 4.6e-79 298.5 217 69.6
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 7.9e-79 297.7 197 72.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 9.7e-77 290.8 222 66.7
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 2.0e-74 283.1 190 74.7
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 3.4e-74 282.3 231 59.7
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 7.4e-69 264.6 181 72.4
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 3.8e-65 252.3 234 53.8
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.9e-64 250.0 231 51.1
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.6e-63 246.9 151 78.8
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.1e-59 232.6 231 54.1
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 7.0e-59 231.5 240 53.8
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 3.5e-58 229.2 231 52.4
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-51 207.6 138 76.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.7e-50 203.0 155 61.9
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.7e-49 200.3 264 42.4
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 6.5e-49 198.4 128 78.1
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 6.1e-47 191.8 233 47.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.0e-45 186.8 240 45.8
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 2.4e-43 179.9 199 50.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.7e-42 176.4 206 51.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 8.6e-41 171.4 224 42.9
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 3.3e-32 142.9 172 45.9
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 5.6e-32 142.1 268 35.8
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 3.4e-29 132.9 109 67.0
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.9e-27 127.1 81 76.5
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-21 107.5 73 67.1
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 8.3e-20 101.7 64 71.9
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 9.2e-19 98.2 65 76.9
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 4.0e-14 82.8 127 40.9
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-13 81.3 47 78.7
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 9.2e-11 71.6 50 72.0
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.9e-09 66.2 212 25.5
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.2e-07 61.2 39 71.8
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 4.7e-07 59.3 47 55.3


User provided reference genes

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