Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.0e-54 216.5 108 100.0
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.3e-28 129.8 114 67.5
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.0e-25 120.2 108 62.0
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 2.7e-23 112.1 152 46.7
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 8.2e-20 100.5 140 45.7
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.0e-17 93.6 123 48.0
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.0e-17 93.6 121 52.1
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.4e-16 89.7 118 49.2
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.4e-16 89.7 115 48.7
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 3.2e-16 88.6 99 54.5
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 7.2e-16 87.4 116 46.6
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 1.2e-15 86.7 92 55.4
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.1e-15 85.9 130 46.2
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.1e-15 85.9 130 46.9
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 2.7e-15 85.5 85 57.6
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.6e-15 85.1 91 57.1
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 2.3e-14 82.4 91 54.9
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.3e-14 82.4 98 51.0
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.9e-14 81.6 83 54.2
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 6.7e-14 80.9 81 56.8
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.1e-13 80.1 81 53.1
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 3.3e-13 78.6 102 52.9
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 7.4e-13 77.4 99 48.5
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.7e-13 77.0 115 44.3
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.7e-13 77.0 80 58.8
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 9.7e-13 77.0 89 50.6
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-12 76.6 81 56.8
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.8e-12 75.5 93 51.6
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.7e-12 75.1 83 55.4
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 4.8e-12 74.7 74 56.8
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.3e-12 74.3 85 49.4
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-11 73.6 74 56.8
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.1e-11 73.6 82 51.2
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.4e-11 73.2 93 50.5
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.4e-11 72.4 149 38.3
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 3.1e-11 72.0 80 55.0
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.1e-11 72.0 88 45.5
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 5.3e-11 71.2 71 53.5
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 7.0e-11 70.9 76 50.0
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 7.0e-11 70.9 93 48.4
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.0e-11 70.9 81 54.3
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 7.0e-11 70.9 77 53.2
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.2e-10 70.1 86 46.5
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.2e-10 70.1 81 46.9
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.6e-10 69.7 67 52.2
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.0e-10 69.3 69 53.6
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.6e-10 68.9 81 50.6
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.6e-10 68.9 85 49.4
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.5e-10 68.6 80 51.2
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 4.5e-10 68.2 104 41.3
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 4.5e-10 68.2 83 54.2
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 1.3e-09 66.6 120 45.8
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.7e-09 66.2 65 55.4
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.7e-09 66.2 97 43.3
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.8e-09 65.1 98 43.9
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 5.0e-09 64.7 80 48.8
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 5.0e-09 64.7 99 43.4
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 5.0e-09 64.7 67 49.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 8.5e-09 63.9 110 40.0
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.1e-08 63.5 88 43.2
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.1e-08 63.5 109 40.4
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.9e-08 62.8 79 45.6
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.5e-08 62.4 104 38.5
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.5e-08 62.4 68 54.4
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.2e-08 62.0 94 42.6
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.2e-08 62.0 80 45.0
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.2e-08 62.0 76 44.7
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 4.2e-08 61.6 73 49.3
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 5.5e-08 61.2 78 44.9
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 5.5e-08 61.2 64 48.4
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 7.2e-08 60.8 83 44.6
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 9.4e-08 60.5 83 48.2
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 1.2e-07 60.1 89 50.6
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.2e-07 60.1 82 39.0
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-07 60.1 106 38.7
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.2e-07 60.1 91 46.2
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.2e-07 60.1 68 45.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.6e-07 59.7 94 41.5
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.6e-07 59.7 67 46.3
Oeu026982.1 Olea europaea HOM05D047474 ORTHO05D004438 1.6e-07 59.7 108 43.5
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 2.1e-07 59.3 98 39.8
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 2.1e-07 59.3 104 38.5
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.7e-07 58.9 79 41.8
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 2.7e-07 58.9 65 46.2
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.6e-07 58.5 88 35.2
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 3.6e-07 58.5 96 42.7
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 4.7e-07 58.2 61 47.5
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.1e-07 57.8 88 35.2
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.1e-07 57.8 88 35.2
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.4e-06 56.6 86 36.0
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 1.4e-06 56.6 73 41.1
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 1.8e-06 56.2 98 39.8
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 1.8e-06 56.2 98 39.8
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.8e-06 56.2 92 37.0
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 2.3e-06 55.8 78 47.4
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 2.3e-06 55.8 78 43.6
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.3e-06 55.8 86 36.0
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.3e-06 55.8 86 36.0
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 2.3e-06 55.8 84 40.5
Oeu026980.1 Olea europaea HOM05D047474 ORTHO05D004438 2.3e-06 55.8 108 42.6
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.3e-06 55.8 82 45.1
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.0e-06 55.5 81 37.0
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.0e-06 55.5 81 45.7
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.0e-06 55.5 79 41.8
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 3.0e-06 55.5 76 40.8
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 3.0e-06 55.5 97 42.3
BraA08t35439Z Brassica rapa HOM05D010843 ORTHO05D012975 4.0e-06 55.1 116 38.8
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 4.0e-06 55.1 56 46.4
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 4.0e-06 55.1 78 46.2
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.2e-06 54.7 73 47.9
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 5.2e-06 54.7 78 46.2
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 6.7e-06 54.3 116 38.8
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 6.7e-06 54.3 67 47.8
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 6.7e-06 54.3 78 39.7
CARHR008010 Cardamine hirsuta HOM05D010843 ORTHO05D012975 8.8e-06 53.9 101 36.6
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 8.8e-06 53.9 89 47.2
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 8.8e-06 53.9 78 42.3
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 8.8e-06 53.9 99 39.4
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 8.8e-06 53.9 99 39.4


User provided reference genes

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